Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G426200.1 | Wheat | cytosol, peroxisome, plasma membrane | 97.32 | 98.07 |
| TraesCS5B01G420300.1 | Wheat | cytosol, nucleus, plasma membrane | 97.32 | 98.07 |
| HORVU5Hr1G101680.2 | Barley | cytosol, endoplasmic reticulum, peroxisome | 93.1 | 93.1 |
| Zm00001d034313_P001 | Maize | cytosol, nucleus, plasma membrane | 77.01 | 81.05 |
| EER90788 | Sorghum | cytosol, nucleus, plasma membrane | 76.25 | 80.57 |
| Os03t0781700-01 | Rice | cytosol, peroxisome, plasma membrane | 74.71 | 78.95 |
| TraesCS2A01G254300.1 | Wheat | cytosol, peroxisome, vacuole | 63.6 | 67.21 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 57.09 | 60.08 |
| KRH14529 | Soybean | cytosol, peroxisome, plasma membrane | 55.56 | 59.18 |
| VIT_12s0028g01090.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 55.94 | 58.87 |
| KRH73588 | Soybean | plasma membrane | 53.64 | 57.14 |
| KRH45979 | Soybean | cytosol, nucleus, plasma membrane | 52.49 | 56.38 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 52.11 | 56.2 |
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 54.02 | 55.51 |
| Solyc12g006290.1.1 | Tomato | nucleus | 48.66 | 54.51 |
| KRG99024 | Soybean | plasma membrane | 52.87 | 52.27 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 28.35 | 52.11 |
| Bra029827.1-P | Field mustard | plasma membrane | 46.74 | 51.05 |
| CDY00916 | Canola | plasma membrane | 46.74 | 51.05 |
| CDY08616 | Canola | plasma membrane | 46.74 | 51.05 |
| AT3G10260.3 | Thale cress | plasma membrane | 48.28 | 47.19 |
| PGSC0003DMT400074138 | Potato | plasma membrane | 51.72 | 45.0 |
| TraesCS3A01G278800.1 | Wheat | golgi | 39.08 | 41.13 |
| TraesCS1A01G081500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 36.78 | 38.25 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 34.87 | 36.69 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 35.63 | 35.77 |
| CDY56712 | Canola | mitochondrion | 47.13 | 34.65 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 33.33 | 34.52 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 29.89 | 33.33 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 40.23 | 32.61 |
| TraesCS3A01G261500.1 | Wheat | plasma membrane | 27.2 | 32.42 |
| TraesCS2A01G544000.1 | Wheat | plasma membrane | 23.75 | 31.16 |
| TraesCS4A01G135900.1 | Wheat | peroxisome | 23.37 | 26.87 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 26.82 | 21.21 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G418200.1 | EnsemblPlantsGene:TraesCS5A01G418200 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF62 |
| PFAM:PF02453 | PFscan:PS50845 | TMHMM:TMhelix | MapMan:13.7.2.1 | : | : |
Description
No Description!
Coordinates
chr5A:-:606162516..606163751
Molecular Weight (calculated)
29453.9 Da
IEP (calculated)
9.526
GRAVY (calculated)
0.044
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MKMSEHSEST AEKLMGNIMD TIADKLPKQK SDNIMSNIMD TISDKLPKQR SGRFDPGSVA DVKNKMFGRQ RSLHGVLGGG KSADVLLWRN KKISSSVLGL
101: ATAIWVFFEW LDYHFLTIIS FALVLGMVVQ FVWSNFSRSS EIPRVKLPED LFVNIAVAIG AQVNKFLGFL QDVSCERNLK HFVLAIVGLW AASVAGSWFN
201: FLTVIYIGFV CAHTLPVLYE KYEDQVDDFL YSILGLLREQ YQKLDSGVLS RMPTKRNKKS E
101: ATAIWVFFEW LDYHFLTIIS FALVLGMVVQ FVWSNFSRSS EIPRVKLPED LFVNIAVAIG AQVNKFLGFL QDVSCERNLK HFVLAIVGLW AASVAGSWFN
201: FLTVIYIGFV CAHTLPVLYE KYEDQVDDFL YSILGLLREQ YQKLDSGVLS RMPTKRNKKS E
001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.