Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- plasma membrane 3
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 97.18 | 54.33 |
| Solyc12g006290.1.1 | Tomato | nucleus | 68.31 | 41.63 |
| KRH73588 | Soybean | plasma membrane | 63.38 | 36.73 |
| KRH14529 | Soybean | cytosol, peroxisome, plasma membrane | 63.38 | 36.73 |
| CDY00916 | Canola | plasma membrane | 60.56 | 35.98 |
| VIT_12s0028g01090.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 61.97 | 35.48 |
| Bra029827.1-P | Field mustard | plasma membrane | 59.15 | 35.15 |
| CDY08616 | Canola | plasma membrane | 59.15 | 35.15 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 58.45 | 34.3 |
| KRH45979 | Soybean | cytosol, nucleus, plasma membrane | 57.75 | 33.74 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 58.45 | 33.47 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 56.34 | 32.26 |
| AT3G10260.3 | Thale cress | plasma membrane | 60.56 | 32.21 |
| Os07t0142000-01 | Rice | plasma membrane | 54.23 | 31.3 |
| EER90788 | Sorghum | cytosol, nucleus, plasma membrane | 54.23 | 31.17 |
| KRG99024 | Soybean | plasma membrane | 57.75 | 31.06 |
| Zm00001d034313_P001 | Maize | cytosol, nucleus, plasma membrane | 54.23 | 31.05 |
| Os03t0781700-01 | Rice | cytosol, peroxisome, plasma membrane | 52.82 | 30.36 |
| TraesCS2D01G254800.1 | Wheat | cytosol, peroxisome, vacuole | 52.82 | 30.36 |
| TraesCS2B01G267800.2 | Wheat | cytosol, peroxisome, vacuole | 52.11 | 29.96 |
| TraesCS2A01G254300.1 | Wheat | cytosol, peroxisome, vacuole | 50.7 | 29.15 |
| TraesCS5D01G426200.1 | Wheat | cytosol, peroxisome, plasma membrane | 52.11 | 28.57 |
| TraesCS5B01G420300.1 | Wheat | cytosol, nucleus, plasma membrane | 52.11 | 28.57 |
| Zm00001d018781_P001 | Maize | extracellular, mitochondrion | 48.59 | 28.4 |
| TraesCS5A01G418200.1 | Wheat | cytosol, peroxisome, plasma membrane | 52.11 | 28.35 |
| HORVU5Hr1G101680.2 | Barley | cytosol, endoplasmic reticulum, peroxisome | 51.41 | 27.97 |
| KXG34376 | Sorghum | plasma membrane | 53.52 | 24.2 |
| CDY56712 | Canola | mitochondrion | 57.75 | 23.1 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 40.14 | 22.53 |
| Solyc03g007740.2.1 | Tomato | nucleus | 40.14 | 22.35 |
| Solyc06g049060.2.1 | Tomato | mitochondrion, plasma membrane | 28.87 | 21.58 |
| Solyc01g095200.2.1 | Tomato | plastid | 39.44 | 21.29 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 38.03 | 20.53 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 38.73 | 20.37 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 28.87 | 19.62 |
| Solyc06g082740.2.1 | Tomato | nucleus | 30.99 | 19.21 |
| HORVU2Hr1G060770.16 | Barley | plasma membrane | 51.41 | 19.06 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 29.58 | 19.0 |
| Solyc09g055250.2.1 | Tomato | cytosol, endoplasmic reticulum, peroxisome | 32.39 | 18.85 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 28.87 | 18.72 |
| Solyc01g107620.2.1 | Tomato | plasma membrane | 27.46 | 17.81 |
| Solyc02g090370.2.1 | Tomato | plasma membrane | 16.9 | 12.83 |
Protein Annotations
| EnsemblPlants:Solyc07g044880.2.1 | EnsemblPlantsGene:Solyc07g044880.2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 |
| InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF62 | PFAM:PF02453 | PFscan:PS50845 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000276C7F1 | UniProt:K4CEP6 | MapMan:13.7.2.1 | : | : |
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:K4CEP6]
Coordinates
chr7:+:57932484..57935573
Molecular Weight (calculated)
16176.9 Da
IEP (calculated)
9.735
GRAVY (calculated)
0.322
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIQFLWKNA SGMINRSPAK VPRLVLRDDL FISIAKSIGA EVNRALGFLQ DVACGTNIKQ FLAVVASLLV AAIIGSWCNF FTVLYIGFVA AHVLPVLYER
101: YDDQVDGFVY NALEKFQCHY QKLDHRVLSR FPTSKFRLKK FE
101: YDDQVDGFVY NALEKFQCHY QKLDHRVLSR FPTSKFRLKK FE
001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.