Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G426200.1 | Wheat | cytosol, peroxisome, plasma membrane | 97.68 | 97.68 |
| TraesCS5A01G418200.1 | Wheat | cytosol, peroxisome, plasma membrane | 98.07 | 97.32 |
| HORVU5Hr1G101680.2 | Barley | cytosol, endoplasmic reticulum, peroxisome | 92.66 | 91.95 |
| Zm00001d034313_P001 | Maize | cytosol, nucleus, plasma membrane | 77.99 | 81.45 |
| EER90788 | Sorghum | cytosol, nucleus, plasma membrane | 77.22 | 80.97 |
| Os03t0781700-01 | Rice | cytosol, peroxisome, plasma membrane | 75.29 | 78.95 |
| TraesCS2B01G267800.2 | Wheat | cytosol, peroxisome, vacuole | 62.55 | 65.59 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 57.53 | 60.08 |
| KRH14529 | Soybean | cytosol, peroxisome, plasma membrane | 55.98 | 59.18 |
| VIT_12s0028g01090.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 56.37 | 58.87 |
| KRH73588 | Soybean | plasma membrane | 54.05 | 57.14 |
| KRH45979 | Soybean | cytosol, nucleus, plasma membrane | 52.9 | 56.38 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 52.12 | 55.79 |
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 54.44 | 55.51 |
| Solyc12g006290.1.1 | Tomato | nucleus | 48.65 | 54.08 |
| KRG99024 | Soybean | plasma membrane | 53.28 | 52.27 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 28.57 | 52.11 |
| Bra029827.1-P | Field mustard | plasma membrane | 47.49 | 51.46 |
| CDY00916 | Canola | plasma membrane | 47.49 | 51.46 |
| CDY08616 | Canola | plasma membrane | 47.49 | 51.46 |
| AT3G10260.3 | Thale cress | plasma membrane | 49.42 | 47.94 |
| PGSC0003DMT400074138 | Potato | plasma membrane | 51.74 | 44.67 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 40.15 | 41.11 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 39.0 | 40.56 |
| TraesCS1B01G099200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 37.07 | 38.4 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 35.52 | 37.1 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 36.29 | 36.15 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 39.77 | 36.01 |
| CDY56712 | Canola | mitochondrion | 48.26 | 35.21 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 30.12 | 33.33 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 27.8 | 32.88 |
| TraesCS2B01G574200.2 | Wheat | plasma membrane | 23.17 | 30.15 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 27.03 | 29.54 |
| TraesCS4B01G169100.2 | Wheat | cytosol, peroxisome, vacuole | 23.17 | 26.43 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G420300.1 | EnsemblPlantsGene:TraesCS5B01G420300 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF62 |
| PFAM:PF02453 | PFscan:PS50845 | TMHMM:TMhelix | MapMan:13.7.2.1 | : | : |
Description
No Description!
Coordinates
chr5B:-:595662082..595663682
Molecular Weight (calculated)
29275.6 Da
IEP (calculated)
9.545
GRAVY (calculated)
0.035
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEHSESTAE KLMGNIMDTI ADRLPKQKSD NIMSNIMDTI SDKLPKQRSG RFDPGSVADV KNKMFGRQRS LHGVLGGGKS ADVLLWRNKK ISSSVLGLAT
101: AIWVFFEWLD YHFLTIISFA LVLGMVVQFV WSNFSRSSEI PRVKLPEDLF VNIAVAIGAQ VNKFLGFLQD VSCERNLKHF VLAIVGLWSA SVAGSWFNFL
201: TVIYIGFVCA HTLPVLYEKY EDQVDDFLYS ILGLLRDQYQ KLDSGVLSRI PTKRNKKRE
101: AIWVFFEWLD YHFLTIISFA LVLGMVVQFV WSNFSRSSEI PRVKLPEDLF VNIAVAIGAQ VNKFLGFLQD VSCERNLKHF VLAIVGLWSA SVAGSWFNFL
201: TVIYIGFVCA HTLPVLYEKY EDQVDDFLYS ILGLLRDQYQ KLDSGVLSRI PTKRNKKRE
001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [cytosol,plasma membrane,peroxisome]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.