Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane, peroxisome
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00916 | Canola | plasma membrane | 62.9 | 65.27 |
| CDY08616 | Canola | plasma membrane | 62.1 | 64.44 |
| AT3G10260.3 | Thale cress | plasma membrane | 61.69 | 57.3 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 32.26 | 56.34 |
| CDY56712 | Canola | mitochondrion | 70.16 | 49.01 |
| Solyc12g006290.1.1 | Tomato | nucleus | 43.15 | 45.92 |
| VIT_12s0028g01090.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 42.74 | 42.74 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 40.73 | 41.74 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 40.73 | 40.73 |
| Os03t0781700-01 | Rice | cytosol, peroxisome, plasma membrane | 39.92 | 40.08 |
| KRH73588 | Soybean | plasma membrane | 39.52 | 40.0 |
| KRH14529 | Soybean | cytosol, peroxisome, plasma membrane | 39.52 | 40.0 |
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 40.73 | 39.76 |
| Zm00001d034313_P001 | Maize | cytosol, nucleus, plasma membrane | 39.52 | 39.52 |
| KRH45979 | Soybean | cytosol, nucleus, plasma membrane | 38.31 | 39.09 |
| EER90788 | Sorghum | cytosol, nucleus, plasma membrane | 38.31 | 38.46 |
| Os07t0142000-01 | Rice | plasma membrane | 37.1 | 37.4 |
| PGSC0003DMT400074138 | Potato | plasma membrane | 43.95 | 36.33 |
| KRG99024 | Soybean | plasma membrane | 38.31 | 35.98 |
| TraesCS5B01G420300.1 | Wheat | cytosol, nucleus, plasma membrane | 37.1 | 35.52 |
| Zm00001d018781_P001 | Maize | extracellular, mitochondrion | 34.68 | 35.39 |
| TraesCS5D01G426200.1 | Wheat | cytosol, peroxisome, plasma membrane | 36.69 | 35.14 |
| TraesCS5A01G418200.1 | Wheat | cytosol, peroxisome, plasma membrane | 36.69 | 34.87 |
| TraesCS2D01G254800.1 | Wheat | cytosol, peroxisome, vacuole | 34.68 | 34.82 |
| HORVU5Hr1G101680.2 | Barley | cytosol, endoplasmic reticulum, peroxisome | 36.29 | 34.48 |
| TraesCS2A01G254300.1 | Wheat | cytosol, peroxisome, vacuole | 34.27 | 34.41 |
| TraesCS2B01G267800.2 | Wheat | cytosol, peroxisome, vacuole | 33.47 | 33.6 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 25.0 | 33.33 |
| KXG34376 | Sorghum | plasma membrane | 37.9 | 29.94 |
| CDY67571 | Canola | plasma membrane | 26.61 | 29.46 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 18.95 | 29.19 |
| CDX75962 | Canola | plasma membrane | 25.81 | 28.57 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 25.81 | 28.57 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 27.02 | 26.69 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 26.61 | 26.29 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 26.61 | 25.98 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 25.4 | 25.93 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 26.21 | 25.59 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 25.81 | 25.5 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 25.4 | 25.2 |
| CDY48510 | Canola | cytosol | 24.6 | 25.1 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 25.4 | 25.1 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 25.0 | 24.8 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 26.21 | 24.34 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 26.21 | 23.64 |
| CDY10954 | Canola | cytosol | 25.0 | 22.96 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 25.4 | 22.83 |
| HORVU2Hr1G060770.16 | Barley | plasma membrane | 34.68 | 22.45 |
| CDY36282 | Canola | plasma membrane | 20.16 | 22.42 |
| CDY24806 | Canola | cytosol | 24.6 | 22.26 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 18.15 | 22.17 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 18.15 | 21.95 |
| CDY41666 | Canola | cytosol | 24.19 | 21.74 |
| CDY51584 | Canola | plasma membrane | 17.74 | 21.67 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 17.74 | 21.46 |
| CDY46172 | Canola | plastid | 17.34 | 21.29 |
| CDX82294 | Canola | plastid | 16.53 | 20.92 |
| CDX99221 | Canola | plasma membrane | 16.53 | 20.2 |
| CDY05135 | Canola | mitochondrion | 25.4 | 20.13 |
| CDY22971 | Canola | plasma membrane | 15.73 | 19.9 |
| CDY22970 | Canola | plasma membrane | 15.73 | 19.9 |
| CDX71213 | Canola | plasma membrane | 16.13 | 19.7 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 16.13 | 19.7 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 18.55 | 19.25 |
| CDY08567 | Canola | cytosol | 18.55 | 19.09 |
| CDX89122 | Canola | extracellular, mitochondrion | 11.69 | 18.95 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 18.55 | 18.78 |
| CDX96038 | Canola | plasma membrane | 15.73 | 18.48 |
| CDX81500 | Canola | plasma membrane | 15.32 | 18.27 |
| CDY01898 | Canola | plasma membrane | 15.32 | 17.92 |
| CDX76854 | Canola | plasma membrane | 14.52 | 17.39 |
| CDY46067 | Canola | plasma membrane | 14.52 | 17.31 |
| CDY12701 | Canola | plasma membrane | 15.32 | 12.58 |
| CDY62522 | Canola | cytosol | 3.63 | 11.25 |
Protein Annotations
| EnsemblPlants:CDX82165 | EnsemblPlantsGene:GSBRNA2T00137228001 | GO:A0A078CZA5 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF62 | PFAM:PF02453 | PFscan:PS50845 | ProteinID:CDX82165 | ProteinID:CDX82165.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EDF842 | MapMan:13.7.2.1 | : | : | : |
Description
BnaC02g21250D
Coordinates
chrLK031827:-:1481157..1483489
Molecular Weight (calculated)
28058.6 Da
IEP (calculated)
9.993
GRAVY (calculated)
0.311
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MFVVQREGNV SLELSPVPLT QVFYGIPFSL SQETQATVTA RRFAILMRRS RTATARILEQ ETVTTRRFAI FIFTLVLLFL TKNKKISASW INVHFLSLVC
101: YRLLLGTIVQ FVWSNASGAL NRSQSGVPRL VLPKDFFAEV GVTIGTEVNR GLMFLQDLAC RGSLKQFLMA AIGLWLAAMI ESCCNFLTVL YIGFVGAHTM
201: PVLYEKYEDE VDGFVDSLLM KFHSHYKKMD TGFLSRIPSG RFGFKKHD
101: YRLLLGTIVQ FVWSNASGAL NRSQSGVPRL VLPKDFFAEV GVTIGTEVNR GLMFLQDLAC RGSLKQFLMA AIGLWLAAMI ESCCNFLTVL YIGFVGAHTM
201: PVLYEKYEDE VDGFVDSLLM KFHSHYKKMD TGFLSRIPSG RFGFKKHD
001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.