Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035242.1-P | Field mustard | cytosol | 68.16 | 83.5 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 39.59 | 60.25 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 47.35 | 43.45 |
| AT4G11220.1 | Thale cress | nucleus | 46.53 | 42.07 |
| CDY10954 | Canola | cytosol | 44.9 | 40.74 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 45.31 | 40.36 |
| KRH59988 | Soybean | mitochondrion | 41.63 | 40.16 |
| CDY24806 | Canola | cytosol | 44.9 | 40.15 |
| CDY41666 | Canola | cytosol | 44.9 | 39.86 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 44.9 | 39.86 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 40.82 | 39.37 |
| Os01t0226300-01 | Rice | plasma membrane | 28.57 | 39.33 |
| CDY62522 | Canola | cytosol | 12.65 | 38.75 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 39.18 | 38.25 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 39.18 | 37.65 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 38.37 | 37.45 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 38.37 | 37.45 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 38.37 | 37.45 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 38.37 | 37.3 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 39.18 | 37.21 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 37.96 | 36.9 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 37.14 | 36.4 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 37.14 | 36.4 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 37.55 | 36.36 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 40.0 | 36.3 |
| TraesCS3A01G278800.1 | Wheat | golgi | 36.73 | 36.29 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 36.73 | 36.29 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 37.14 | 36.26 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 37.14 | 36.11 |
| CDY05135 | Canola | mitochondrion | 46.12 | 36.1 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 37.96 | 36.05 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 37.14 | 35.97 |
| Zm00001d012776_P001 | Maize | extracellular | 37.14 | 35.97 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 39.59 | 35.93 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 36.73 | 35.86 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 37.14 | 35.69 |
| Zm00001d043551_P003 | Maize | plasma membrane | 37.14 | 35.41 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 35.92 | 35.2 |
| Os01t0736900-01 | Rice | plasma membrane | 36.33 | 35.18 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 35.51 | 35.08 |
| Os05t0526400-01 | Rice | plasma membrane | 35.92 | 35.06 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 36.33 | 35.04 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 35.51 | 34.94 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 36.33 | 34.9 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 35.92 | 34.65 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 35.51 | 34.25 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 30.61 | 34.25 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 31.43 | 33.48 |
| Zm00001d016041_P001 | Maize | extracellular | 31.02 | 33.04 |
| EER89811 | Sorghum | peroxisome | 33.47 | 32.03 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 36.73 | 31.47 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 36.73 | 31.47 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 29.8 | 31.47 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 36.33 | 31.34 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 35.1 | 30.82 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 32.65 | 30.65 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 32.24 | 30.38 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 32.24 | 30.38 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 31.84 | 30.0 |
| Os06t0503400-01 | Rice | plasma membrane | 32.24 | 29.81 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 36.33 | 29.09 |
| HORVU7Hr1G081290.4 | Barley | plastid | 27.35 | 29.0 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 36.33 | 28.34 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 36.33 | 27.64 |
| CDY00916 | Canola | plasma membrane | 26.94 | 27.62 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 27.35 | 27.57 |
| CDY48510 | Canola | cytosol | 27.35 | 27.57 |
| CDY08616 | Canola | plasma membrane | 26.12 | 26.78 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 32.24 | 26.33 |
| Zm00001d020229_P001 | Maize | plasma membrane | 16.33 | 26.32 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 26.53 | 25.79 |
| CDX89122 | Canola | extracellular, mitochondrion | 15.92 | 25.49 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 15.51 | 25.33 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 18.78 | 24.73 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 26.12 | 24.52 |
| CDX75962 | Canola | plasma membrane | 22.04 | 24.11 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 22.04 | 24.11 |
| CDX96038 | Canola | plasma membrane | 20.41 | 23.7 |
| CDX99221 | Canola | plasma membrane | 19.59 | 23.65 |
| CDY46172 | Canola | plastid | 19.18 | 23.27 |
| CDY67571 | Canola | plasma membrane | 21.22 | 23.21 |
| CDY01898 | Canola | plasma membrane | 20.0 | 23.11 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 18.78 | 22.66 |
| CDY51584 | Canola | plasma membrane | 18.78 | 22.66 |
| CDX81500 | Canola | plasma membrane | 18.78 | 22.12 |
| CDX82294 | Canola | plastid | 17.14 | 21.43 |
| CDY36282 | Canola | plasma membrane | 19.18 | 21.08 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 17.55 | 20.98 |
| CDY22970 | Canola | plasma membrane | 16.73 | 20.92 |
| CDY22971 | Canola | plasma membrane | 16.73 | 20.92 |
| CDX71213 | Canola | plasma membrane | 17.14 | 20.69 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 17.14 | 20.69 |
| CDY46067 | Canola | plasma membrane | 17.55 | 20.67 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 20.0 | 20.5 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 16.73 | 20.0 |
| CDY08567 | Canola | cytosol | 19.59 | 19.92 |
| CDX76854 | Canola | plasma membrane | 16.33 | 19.32 |
| Zm00001d020729_P001 | Maize | plasma membrane | 7.35 | 18.95 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 18.78 | 18.55 |
| CDY56712 | Canola | mitochondrion | 26.12 | 18.03 |
| CDY12701 | Canola | plasma membrane | 19.59 | 15.89 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 7.35 | 10.0 |
Protein Annotations
| EnsemblPlants:CDX86802 | EnsemblPlantsGene:GSBRNA2T00145541001 | GO:A0A078DCK7 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF70 | PFAM:PF02453 | PFscan:PS50845 | ProteinID:CDX86802 | ProteinID:CDX86802.1 | TMHMM:TMhelix |
| UniParc:UPI0004EDC401 | MapMan:13.7.2.1 | : | : | : | : |
Description
BnaA09g21920D
Coordinates
chrLK031847:+:849630..850729
Molecular Weight (calculated)
28208.5 Da
IEP (calculated)
9.628
GRAVY (calculated)
-0.010
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MADERKHEEP LPNLDPTVEV VERESLLDKV SEKPSSPSSL RFTVCSAERG QFTRFSAAEN VRLRWLKRFV LGIAADILMW KNKKVSGGAT VSWVLFELIE
101: YHLLTLLCHL MIVSLSGVSL FDSLIRLLFS LHQRFLKYTS LKSLFFSLLR GSESKSPWLL LSSRDCFWKE SQEVPFRYPR VVFLTLAYIA LVLLFTVPLI
201: YDKYEDKVDS YGEKAMAELN KQYAVLDAKM LSKISRGPLT NKKKD
101: YHLLTLLCHL MIVSLSGVSL FDSLIRLLFS LHQRFLKYTS LKSLFFSLLR GSESKSPWLL LSSRDCFWKE SQEVPFRYPR VVFLTLAYIA LVLLFTVPLI
201: YDKYEDKVDS YGEKAMAELN KQYAVLDAKM LSKISRGPLT NKKKD
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Arabidopsis Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.