Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09330.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT1G09330.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT1G09330.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT1G09330.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT1G09330.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94985 | Canola | golgi, plasma membrane, vacuole | 97.78 | 97.78 |
| CDY31098 | Canola | golgi, plasma membrane, vacuole | 97.78 | 97.78 |
| CDX93510 | Canola | golgi, plasma membrane, vacuole | 96.67 | 96.67 |
| CDY32169 | Canola | golgi, plasma membrane, vacuole | 96.67 | 96.67 |
| AT1G09330.1 | Thale cress | golgi, plasma membrane, vacuole | 98.33 | 95.16 |
| KRH33787 | Soybean | golgi, plasma membrane, vacuole | 83.89 | 82.51 |
| KRG90495 | Soybean | golgi, plasma membrane, vacuole | 83.89 | 82.51 |
| GSMUA_Achr1P24970_001 | Banana | golgi, plasma membrane, vacuole | 82.78 | 81.42 |
| VIT_14s0060g00830.t01 | Wine grape | golgi, plasma membrane, vacuole | 82.22 | 80.87 |
| GSMUA_Achr2P07050_001 | Banana | golgi, plasma membrane, vacuole | 81.67 | 80.33 |
| GSMUA_Achr8P29900_001 | Banana | golgi, plasma membrane, vacuole | 80.56 | 79.23 |
| KRG96705 | Soybean | golgi, plasma membrane, vacuole | 79.44 | 78.14 |
| Solyc06g073270.2.1 | Tomato | golgi, plasma membrane, vacuole | 79.44 | 78.14 |
| PGSC0003DMT400069186 | Potato | golgi, plasma membrane, vacuole | 78.89 | 77.6 |
| Zm00001d040734_P001 | Maize | golgi, plasma membrane, vacuole | 77.78 | 76.5 |
| EES00703 | Sorghum | golgi, plasma membrane, vacuole | 77.22 | 75.96 |
| VIT_07s0005g01960.t01 | Wine grape | golgi, plasma membrane, vacuole | 69.44 | 75.76 |
| KRH68422 | Soybean | endoplasmic reticulum, extracellular, vacuole | 47.78 | 74.78 |
| Zm00001d010824_P001 | Maize | plasma membrane | 75.56 | 74.32 |
| Os01t0331900-01 | Rice | golgi, plasma membrane, vacuole | 75.0 | 73.77 |
| EES17764 | Sorghum | golgi, plasma membrane, vacuole | 75.0 | 73.77 |
| TraesCS1A01G106000.1 | Wheat | golgi | 75.56 | 73.12 |
| TraesCS1B01G128400.1 | Wheat | golgi, plasma membrane, vacuole | 75.56 | 73.12 |
| TraesCS1D01G109000.1 | Wheat | golgi, plasma membrane, vacuole | 75.56 | 73.12 |
| Os05t0159100-01 | Rice | plasma membrane | 72.78 | 70.05 |
| HORVU1Hr1G023500.9 | Barley | golgi, mitochondrion, plasma membrane | 75.0 | 67.84 |
Protein Annotations
| EnsemblPlants:CDY64777 | EnsemblPlantsGene:GSBRNA2T00042711001 | GO:A0A078JHB6 | GO:GO:0000139 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TVP23-like |
| PANTHER:PTHR13019 | PANTHER:PTHR13019:SF14 | PFAM:PF05832 | ProteinID:CDY64777 | ProteinID:CDY64777.1 | TMHMM:TMhelix |
| UniParc:UPI0004EF2844 | UniProt:A0A078JHB6 | MapMan:22.5.6.1 | : | : | : |
Description
BnaC08g50040DGolgi apparatus membrane protein TVP23 [Source:UniProtKB/TrEMBL;Acc:A0A078JHB6]
Coordinates
chrLK034548:+:17452..18891
Molecular Weight (calculated)
20495.1 Da
IEP (calculated)
9.515
GRAVY (calculated)
0.562
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAPVENYAN PKTCLFHVLF KGAALAFYIL SALFFNSFVI IFVVTVLLAA LDFWVVKNVS GRILVGLRWW NEINDLGESV WKFESLDQES LARMNKKDSW
101: LFWWTLYLAA AAWFILGVFS LIRFQADYLL VVGVCLSLNV ANIIGFTKCK KDAKKQLQQF ASQTIASRFQ STVQSAFTLV
101: LFWWTLYLAA AAWFILGVFS LIRFQADYLL VVGVCLSLNV ANIIGFTKCK KDAKKQLQQF ASQTIASRFQ STVQSAFTLV
001: MDPNNQIQAP VENYANPRTC LFHVLFKGAA LAFYILSALF FNSFVIIFVV TVLLAALDFW VVKNVSGRIL VGLRWWNEIN DLGESVWKFE SLDQESLARM
101: NKKDSWLFWW TLYLAAAAWF ILGVFSLIRF QADYLLVVGV CLSLNVANII GFTKCKKDAK KQFQQFASQT IASRFQSTVQ SAFTLV
101: NKKDSWLFWW TLYLAAAAWF ILGVFSLIRF QADYLLVVGV CLSLNVANII GFTKCKKDAK KQFQQFASQT IASRFQSTVQ SAFTLV
Arabidopsis Description
ECHGolgi apparatus membrane protein-like protein ECHIDNA [Source:UniProtKB/Swiss-Prot;Acc:Q8LEK2]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.