Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 3
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0080g00970.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09330.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P24970_001 | Banana | golgi, plasma membrane, vacuole | 83.03 | 74.86 |
| GSMUA_Achr8P29900_001 | Banana | golgi, plasma membrane, vacuole | 82.42 | 74.32 |
| GSMUA_Achr2P07050_001 | Banana | golgi, plasma membrane, vacuole | 81.21 | 73.22 |
| VIT_14s0060g00830.t01 | Wine grape | golgi, plasma membrane, vacuole | 79.39 | 71.58 |
| CDY32169 | Canola | golgi, plasma membrane, vacuole | 76.36 | 70.0 |
| Bra030769.1-P | Field mustard | golgi, plasma membrane, vacuole | 77.58 | 69.95 |
| CDY31098 | Canola | golgi, plasma membrane, vacuole | 75.76 | 69.44 |
| CDY64777 | Canola | golgi, plasma membrane, vacuole | 75.76 | 69.44 |
| Os01t0331900-01 | Rice | golgi, plasma membrane, vacuole | 76.97 | 69.4 |
| CDX94985 | Canola | golgi, plasma membrane, vacuole | 75.15 | 68.89 |
| Zm00001d040734_P001 | Maize | golgi, plasma membrane, vacuole | 76.36 | 68.85 |
| EES00703 | Sorghum | golgi, plasma membrane, vacuole | 76.36 | 68.85 |
| Bra018566.1-P | Field mustard | golgi, plasma membrane, vacuole | 76.36 | 68.85 |
| CDX93510 | Canola | golgi, plasma membrane, vacuole | 74.55 | 68.33 |
| EES17764 | Sorghum | golgi, plasma membrane, vacuole | 75.15 | 67.76 |
| Zm00001d010824_P001 | Maize | plasma membrane | 75.15 | 67.76 |
| AT1G09330.1 | Thale cress | golgi, plasma membrane, vacuole | 76.36 | 67.74 |
| TraesCS1A01G106000.1 | Wheat | golgi | 75.15 | 66.67 |
| TraesCS1B01G128400.1 | Wheat | golgi, plasma membrane, vacuole | 75.15 | 66.67 |
| TraesCS1D01G109000.1 | Wheat | golgi, plasma membrane, vacuole | 75.15 | 66.67 |
| Os05t0159100-01 | Rice | plasma membrane | 72.12 | 63.64 |
| HORVU1Hr1G023500.9 | Barley | golgi, mitochondrion, plasma membrane | 73.33 | 60.8 |
Protein Annotations
| MapMan:22.5.6.1 | ProteinID:CCB60041 | ProteinID:CCB60041.1 | UniProt:F6HZC6 | EMBL:FN596502 | GO:GO:0000139 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009306 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 |
| GO:GO:0030173 | PFAM:PF05832 | PANTHER:PTHR13019 | PANTHER:PTHR13019:SF12 | TIGR:TC61892 | TMHMM:TMhelix |
| InterPro:TVP23-like | UniParc:UPI000210A2B0 | ArrayExpress:VIT_07s0005g01960 | EnsemblPlantsGene:VIT_07s0005g01960 | EnsemblPlants:VIT_07s0005g01960.t01 | unigene:Vvi.4989 |
| RefSeq:XP_002279089 | RefSeq:XP_002279089.1 | : | : | : | : |
Description
Golgi apparatus membrane protein TVP23 [Source:UniProtKB/TrEMBL;Acc:F6HZC6]
Coordinates
chr7:-:4404069..4412549
Molecular Weight (calculated)
19088.5 Da
IEP (calculated)
7.128
GRAVY (calculated)
0.646
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQNQPAGEN YANPKTCFFH VLFKAAALAF YILSALFFDS FVIIFVVTVV LAALDFWVVK NVSGRILVGL RWWNEINEQG ESVWKFECLD QESLARMNKK
101: DSWLFWWTIY LNAVAWIFLG IFSIIRFEPD YVLVVGVCLS LSIANIVGFT RCRKVMLAKW LDVLI
101: DSWLFWWTIY LNAVAWIFLG IFSIIRFEPD YVLVVGVCLS LSIANIVGFT RCRKVMLAKW LDVLI
001: MDPNNQIQAP VENYANPRTC LFHVLFKGAA LAFYILSALF FNSFVIIFVV TVLLAALDFW VVKNVSGRIL VGLRWWNEIN DLGESVWKFE SLDQESLARM
101: NKKDSWLFWW TLYLAAAAWF ILGVFSLIRF QADYLLVVGV CLSLNVANII GFTKCKKDAK KQFQQFASQT IASRFQSTVQ SAFTLV
101: NKKDSWLFWW TLYLAAAAWF ILGVFSLIRF QADYLLVVGV CLSLNVANII GFTKCKKDAK KQFQQFASQT IASRFQSTVQ SAFTLV
Arabidopsis Description
ECHGolgi apparatus membrane protein-like protein ECHIDNA [Source:UniProtKB/Swiss-Prot;Acc:Q8LEK2]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.