Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- golgi 3
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002403.1-P | |
| Bra006619.1-P | |
| Bra020182.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09330.1 | Bra002403.1-P | AT5G22290.1 | 21798944 |
| AT1G09330.1 | Bra006619.1-P | AT5G22290.1 | 21798944 |
| AT1G09330.1 | Bra020182.1-P | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93510 | Canola | golgi, plasma membrane, vacuole | 97.27 | 98.89 |
| Bra030769.1-P | Field mustard | golgi, plasma membrane, vacuole | 96.72 | 96.72 |
| AT1G09330.1 | Thale cress | golgi, plasma membrane, vacuole | 97.27 | 95.7 |
| KRG90495 | Soybean | golgi, plasma membrane, vacuole | 84.7 | 84.7 |
| KRH33787 | Soybean | golgi, plasma membrane, vacuole | 84.7 | 84.7 |
| GSMUA_Achr1P24970_001 | Banana | golgi, plasma membrane, vacuole | 83.06 | 83.06 |
| VIT_14s0060g00830.t01 | Wine grape | golgi, plasma membrane, vacuole | 81.97 | 81.97 |
| GSMUA_Achr8P29900_001 | Banana | golgi, plasma membrane, vacuole | 80.87 | 80.87 |
| GSMUA_Achr2P07050_001 | Banana | golgi, plasma membrane, vacuole | 80.33 | 80.33 |
| KRG96705 | Soybean | golgi, plasma membrane, vacuole | 80.33 | 80.33 |
| Solyc06g073270.2.1 | Tomato | golgi, plasma membrane, vacuole | 78.14 | 78.14 |
| PGSC0003DMT400069186 | Potato | golgi, plasma membrane, vacuole | 77.6 | 77.6 |
| VIT_07s0005g01960.t01 | Wine grape | golgi, plasma membrane, vacuole | 68.85 | 76.36 |
| Zm00001d040734_P001 | Maize | golgi, plasma membrane, vacuole | 75.96 | 75.96 |
| EES00703 | Sorghum | golgi, plasma membrane, vacuole | 75.41 | 75.41 |
| KRH68422 | Soybean | endoplasmic reticulum, extracellular, vacuole | 46.99 | 74.78 |
| Zm00001d010824_P001 | Maize | plasma membrane | 74.32 | 74.32 |
| TraesCS1A01G106000.1 | Wheat | golgi | 75.41 | 74.19 |
| TraesCS1B01G128400.1 | Wheat | golgi, plasma membrane, vacuole | 75.41 | 74.19 |
| TraesCS1D01G109000.1 | Wheat | golgi, plasma membrane, vacuole | 75.41 | 74.19 |
| EES17764 | Sorghum | golgi, plasma membrane, vacuole | 73.77 | 73.77 |
| Os01t0331900-01 | Rice | golgi, plasma membrane, vacuole | 73.22 | 73.22 |
| Os05t0159100-01 | Rice | plasma membrane | 71.58 | 70.05 |
| HORVU1Hr1G023500.9 | Barley | golgi, mitochondrion, plasma membrane | 74.32 | 68.34 |
Protein Annotations
| EnsemblPlants:Bra018566.1 | EnsemblPlants:Bra018566.1-P | EnsemblPlantsGene:Bra018566 | GO:GO:0000139 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TVP23-like |
| PANTHER:PTHR13019 | PANTHER:PTHR13019:SF14 | PFAM:PF05832 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000253E8A7 |
| UniProt:M4DPX5 | MapMan:22.5.6.1 | : | : | : | : |
Description
AT1G09330 (E=4e-075) | unknown protein
Coordinates
chrA06:-:3181897..3183404
Molecular Weight (calculated)
20778.3 Da
IEP (calculated)
8.838
GRAVY (calculated)
0.491
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSQPPVEN YANPNTCLFH VLFKGAALAF YILSALFFNS FVIIFVVTVL LAALDFWVVK NVSGRILVGL RWWNEINDLG ESVWKFESLD QESLARMNKK
101: DSWLFWWTLY LAAAAWLILG VFSLIRFQAD YLLVVGVCLS LNAANIIGFT KCKKDAKKQF QQFASQTIAS RFQSTVQSAF TLV
101: DSWLFWWTLY LAAAAWLILG VFSLIRFQAD YLLVVGVCLS LNAANIIGFT KCKKDAKKQF QQFASQTIAS RFQSTVQSAF TLV
001: MDPNNQIQAP VENYANPRTC LFHVLFKGAA LAFYILSALF FNSFVIIFVV TVLLAALDFW VVKNVSGRIL VGLRWWNEIN DLGESVWKFE SLDQESLARM
101: NKKDSWLFWW TLYLAAAAWF ILGVFSLIRF QADYLLVVGV CLSLNVANII GFTKCKKDAK KQFQQFASQT IASRFQSTVQ SAFTLV
101: NKKDSWLFWW TLYLAAAAWF ILGVFSLIRF QADYLLVVGV CLSLNVANII GFTKCKKDAK KQFQQFASQT IASRFQSTVQ SAFTLV
Arabidopsis Description
ECHGolgi apparatus membrane protein-like protein ECHIDNA [Source:UniProtKB/Swiss-Prot;Acc:Q8LEK2]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.