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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:
  • plastid 2
  • golgi 3
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 3
  • plasma membrane 3
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX94985 Canola golgi, plasma membrane, vacuole 98.89 98.89
CDY32169 Canola golgi, plasma membrane, vacuole 97.78 97.78
Bra018566.1-P Field mustard golgi, plasma membrane, vacuole 98.89 97.27
CDY31098 Canola golgi, plasma membrane, vacuole 96.67 96.67
CDY64777 Canola golgi, plasma membrane, vacuole 96.67 96.67
AT1G09330.1 Thale cress golgi, plasma membrane, vacuole 96.67 93.55
KRH33787 Soybean golgi, plasma membrane, vacuole 83.89 82.51
KRG90495 Soybean golgi, plasma membrane, vacuole 83.89 82.51
GSMUA_Achr1P24970_001 Banana golgi, plasma membrane, vacuole 82.22 80.87
VIT_14s0060g00830.t01 Wine grape golgi, plasma membrane, vacuole 81.67 80.33
GSMUA_Achr2P07050_001 Banana golgi, plasma membrane, vacuole 80.56 79.23
GSMUA_Achr8P29900_001 Banana golgi, plasma membrane, vacuole 80.56 79.23
KRG96705 Soybean golgi, plasma membrane, vacuole 80.0 78.69
Solyc06g073270.2.1 Tomato golgi, plasma membrane, vacuole 77.78 76.5
PGSC0003DMT400069186 Potato golgi, plasma membrane, vacuole 77.22 75.96
Zm00001d040734_P001 Maize golgi, plasma membrane, vacuole 76.67 75.41
EES00703 Sorghum golgi, plasma membrane, vacuole 76.11 74.86
VIT_07s0005g01960.t01 Wine grape golgi, plasma membrane, vacuole 68.33 74.55
KRH68422 Soybean endoplasmic reticulum, extracellular, vacuole 47.22 73.91
Zm00001d010824_P001 Maize plasma membrane 75.0 73.77
EES17764 Sorghum golgi, plasma membrane, vacuole 74.44 73.22
Os01t0331900-01 Rice golgi, plasma membrane, vacuole 73.89 72.68
TraesCS1A01G106000.1 Wheat golgi 75.0 72.58
TraesCS1B01G128400.1 Wheat golgi, plasma membrane, vacuole 75.0 72.58
TraesCS1D01G109000.1 Wheat golgi, plasma membrane, vacuole 75.0 72.58
Os05t0159100-01 Rice plasma membrane 72.22 69.52
HORVU1Hr1G023500.9 Barley golgi, mitochondrion, plasma membrane 74.44 67.34
Protein Annotations
EnsemblPlants:CDX93510EnsemblPlantsGene:GSBRNA2T00156180001GO:A0A078DVY0GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:TVP23-likePANTHER:PTHR13019PANTHER:PTHR13019:SF14PFAM:PF05832ProteinID:CDX93510ProteinID:CDX93510.1
SEG:segTMHMM:TMhelixUniParc:UPI0004EF3A79MapMan:22.5.6.1::
Description
BnaA06g05380D
Coordinates
chrLK031876:+:489188..490924
Molecular Weight (calculated)
20465.0 Da
IEP (calculated)
9.203
GRAVY (calculated)
0.531
Length
180 amino acids
Sequence
(BLAST)
001: MQPPVENYAN PNTCLFHVLF KGAALAFYIL SALFFNSFVI IFVVSVLLAA LDFWVVKNVS GRILVGLRWW NEINDLGESV WKFESLDQES LARMNKKDSW
101: LFWWTLYLAA AAWLILGVFS LIRFQADYLL VVGVCLSLNA ANIIGFTKCK KDAKKQFQQF ASQTIASRFQ STVQSAFTLV
Best Arabidopsis Sequence Match ( AT1G09330.1 )
(BLAST)
001: MDPNNQIQAP VENYANPRTC LFHVLFKGAA LAFYILSALF FNSFVIIFVV TVLLAALDFW VVKNVSGRIL VGLRWWNEIN DLGESVWKFE SLDQESLARM
101: NKKDSWLFWW TLYLAAAAWF ILGVFSLIRF QADYLLVVGV CLSLNVANII GFTKCKKDAK KQFQQFASQT IASRFQSTVQ SAFTLV
Arabidopsis Description
ECHGolgi apparatus membrane protein-like protein ECHIDNA [Source:UniProtKB/Swiss-Prot;Acc:Q8LEK2]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.