Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- golgi 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G109000.1 | Wheat | golgi, plasma membrane, vacuole | 90.45 | 96.77 |
| TraesCS1B01G128400.1 | Wheat | golgi, plasma membrane, vacuole | 90.45 | 96.77 |
| TraesCS1A01G106000.1 | Wheat | golgi | 90.45 | 96.77 |
| Zm00001d010824_P001 | Maize | plasma membrane | 82.41 | 89.62 |
| EES17764 | Sorghum | golgi, plasma membrane, vacuole | 81.41 | 88.52 |
| Os05t0159100-01 | Rice | plasma membrane | 81.91 | 87.17 |
| KRG90495 | Soybean | golgi, plasma membrane, vacuole | 71.36 | 77.6 |
| KRH33787 | Soybean | golgi, plasma membrane, vacuole | 71.36 | 77.6 |
| GSMUA_Achr2P07050_001 | Banana | golgi, plasma membrane, vacuole | 71.36 | 77.6 |
| GSMUA_Achr1P24970_001 | Banana | golgi, plasma membrane, vacuole | 70.85 | 77.05 |
| GSMUA_Achr8P29900_001 | Banana | golgi, plasma membrane, vacuole | 69.35 | 75.41 |
| PGSC0003DMT400069186 | Potato | golgi, plasma membrane, vacuole | 69.35 | 75.41 |
| Solyc06g073270.2.1 | Tomato | golgi, plasma membrane, vacuole | 69.35 | 75.41 |
| CDY64777 | Canola | golgi, plasma membrane, vacuole | 67.84 | 75.0 |
| CDY32169 | Canola | golgi, plasma membrane, vacuole | 67.84 | 75.0 |
| CDY31098 | Canola | golgi, plasma membrane, vacuole | 67.84 | 75.0 |
| CDX94985 | Canola | golgi, plasma membrane, vacuole | 67.84 | 75.0 |
| VIT_14s0060g00830.t01 | Wine grape | golgi, plasma membrane, vacuole | 68.84 | 74.86 |
| CDX93510 | Canola | golgi, plasma membrane, vacuole | 67.34 | 74.44 |
| Bra018566.1-P | Field mustard | golgi, plasma membrane, vacuole | 68.34 | 74.32 |
| KRG96705 | Soybean | golgi, plasma membrane, vacuole | 67.84 | 73.77 |
| Bra030769.1-P | Field mustard | golgi, plasma membrane, vacuole | 67.84 | 73.77 |
| VIT_07s0005g01960.t01 | Wine grape | golgi, plasma membrane, vacuole | 60.8 | 73.33 |
| AT1G09330.1 | Thale cress | golgi, plasma membrane, vacuole | 67.84 | 72.58 |
| KRH68422 | Soybean | endoplasmic reticulum, extracellular, vacuole | 40.2 | 69.57 |
Protein Annotations
| MapMan:22.5.6.1 | UniProt:A0A287EXH9 | GO:GO:0000139 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0006810 | GO:GO:0007030 |
| GO:GO:0008150 | GO:GO:0009306 | GO:GO:0009653 | GO:GO:0009826 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0040007 | EnsemblPlantsGene:HORVU1Hr1G023500 | EnsemblPlants:HORVU1Hr1G023500.9 |
| PFAM:PF05832 | PANTHER:PTHR13019 | PANTHER:PTHR13019:SF14 | TMHMM:TMhelix | InterPro:TVP23-like | UniParc:UPI000B460AA7 |
Description
Golgi apparatus membrane protein TVP23 [Source:UniProtKB/TrEMBL;Acc:A0A287EXH9]
Coordinates
chrchr1H:+:103970074..103972652
Molecular Weight (calculated)
22520.7 Da
IEP (calculated)
9.289
GRAVY (calculated)
0.579
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: RMQLSWFLGR TVKSCGLRVV SENYANPITC LFHVLFKASA LAFYILFSLF VKSFVIIFVI TVLLAALDFW VVKNVSGRIL VGLRWWNEID DDGNSVWKFE
101: CLDGESLARM NKKDSWLFWW TLYLNAAAWI ILAIFSLIRL EADYLLVVGV CLTLSLANIV GFTKCNKDAK KNIRAFAENA AQNAITSRIT SSLQSAFGI
101: CLDGESLARM NKKDSWLFWW TLYLNAAAWI ILAIFSLIRL EADYLLVVGV CLTLSLANIV GFTKCNKDAK KNIRAFAENA AQNAITSRIT SSLQSAFGI
001: MDPNNQIQAP VENYANPRTC LFHVLFKGAA LAFYILSALF FNSFVIIFVV TVLLAALDFW VVKNVSGRIL VGLRWWNEIN DLGESVWKFE SLDQESLARM
101: NKKDSWLFWW TLYLAAAAWF ILGVFSLIRF QADYLLVVGV CLSLNVANII GFTKCKKDAK KQFQQFASQT IASRFQSTVQ SAFTLV
101: NKKDSWLFWW TLYLAAAAWF ILGVFSLIRF QADYLLVVGV CLSLNVANII GFTKCKKDAK KQFQQFASQT IASRFQSTVQ SAFTLV
Arabidopsis Description
ECHGolgi apparatus membrane protein-like protein ECHIDNA [Source:UniProtKB/Swiss-Prot;Acc:Q8LEK2]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.