Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015077 | |
| PGSC0003DMT400050482 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09330.1 | PGSC0003DMT400015077 | AT5G22290.1 | 21798944 |
| AT1G09330.1 | PGSC0003DMT400050482 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g073270.2.1 | Tomato | golgi, plasma membrane, vacuole | 98.91 | 98.91 |
| VIT_14s0060g00830.t01 | Wine grape | golgi, plasma membrane, vacuole | 85.25 | 85.25 |
| KRH33787 | Soybean | golgi, plasma membrane, vacuole | 84.15 | 84.15 |
| KRG90495 | Soybean | golgi, plasma membrane, vacuole | 83.61 | 83.61 |
| GSMUA_Achr1P24970_001 | Banana | golgi, plasma membrane, vacuole | 83.61 | 83.61 |
| GSMUA_Achr8P29900_001 | Banana | golgi, plasma membrane, vacuole | 81.97 | 81.97 |
| KRG96705 | Soybean | golgi, plasma membrane, vacuole | 80.87 | 80.87 |
| GSMUA_Achr2P07050_001 | Banana | golgi, plasma membrane, vacuole | 80.33 | 80.33 |
| CDY64777 | Canola | golgi, plasma membrane, vacuole | 77.6 | 78.89 |
| Bra030769.1-P | Field mustard | golgi, plasma membrane, vacuole | 78.69 | 78.69 |
| CDY31098 | Canola | golgi, plasma membrane, vacuole | 77.05 | 78.33 |
| CDX94985 | Canola | golgi, plasma membrane, vacuole | 77.05 | 78.33 |
| CDY32169 | Canola | golgi, plasma membrane, vacuole | 77.05 | 78.33 |
| Bra018566.1-P | Field mustard | golgi, plasma membrane, vacuole | 77.6 | 77.6 |
| AT1G09330.1 | Thale cress | golgi, plasma membrane, vacuole | 78.69 | 77.42 |
| CDX93510 | Canola | golgi, plasma membrane, vacuole | 75.96 | 77.22 |
| KRH68422 | Soybean | endoplasmic reticulum, extracellular, vacuole | 48.09 | 76.52 |
| Zm00001d010824_P001 | Maize | plasma membrane | 75.96 | 75.96 |
| EES17764 | Sorghum | golgi, plasma membrane, vacuole | 75.41 | 75.41 |
| Os01t0331900-01 | Rice | golgi, plasma membrane, vacuole | 75.41 | 75.41 |
| TraesCS1A01G106000.1 | Wheat | golgi | 75.96 | 74.73 |
| TraesCS1B01G128400.1 | Wheat | golgi, plasma membrane, vacuole | 75.96 | 74.73 |
| TraesCS1D01G109000.1 | Wheat | golgi, plasma membrane, vacuole | 75.96 | 74.73 |
| EES00703 | Sorghum | golgi, plasma membrane, vacuole | 74.32 | 74.32 |
| Zm00001d040734_P001 | Maize | golgi, plasma membrane, vacuole | 73.77 | 73.77 |
| Os05t0159100-01 | Rice | plasma membrane | 73.77 | 72.19 |
| HORVU1Hr1G023500.9 | Barley | golgi, mitochondrion, plasma membrane | 75.41 | 69.35 |
Protein Annotations
| EntrezGene:102598155 | MapMan:22.5.6.1 | GO:GO:0000139 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005802 | GO:GO:0006810 | GO:GO:0007030 |
| GO:GO:0008150 | GO:GO:0009306 | GO:GO:0009653 | GO:GO:0009826 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0040007 | UniProt:M1CK18 | PFAM:PF05832 |
| EnsemblPlantsGene:PGSC0003DMG400026912 | PGSC:PGSC0003DMG400026912 | EnsemblPlants:PGSC0003DMT400069186 | PANTHER:PTHR13019 | PANTHER:PTHR13019:SF14 | TMHMM:TMhelix |
| InterPro:TVP23-like | UniParc:UPI0002953579 | RefSeq:XP_006347294.1 | SEG:seg | : | : |
Description
Protein FAM18B [Source:PGSC_GENE;Acc:PGSC0003DMG400026912]
Coordinates
chr6:-:53807726..53811504
Molecular Weight (calculated)
20930.5 Da
IEP (calculated)
7.289
GRAVY (calculated)
0.572
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLNPPAGED YAHPQICFFH VLFKAAALAF YILSALFVDS FVIIFVITVL LAALDFWVVK NVSGRILVGL RWWNEIDDNG ESVWRFECLD QESMARMNKK
101: DSWLFWWTLY LTAVAWFFLA IFSLIRFQAD YLLVVGVCLT LGVANIVGFT RCRKDAKKQL QAFATQTLTS RFSSTLQSAF SVV
101: DSWLFWWTLY LTAVAWFFLA IFSLIRFQAD YLLVVGVCLT LGVANIVGFT RCRKDAKKQL QAFATQTLTS RFSSTLQSAF SVV
001: MDPNNQIQAP VENYANPRTC LFHVLFKGAA LAFYILSALF FNSFVIIFVV TVLLAALDFW VVKNVSGRIL VGLRWWNEIN DLGESVWKFE SLDQESLARM
101: NKKDSWLFWW TLYLAAAAWF ILGVFSLIRF QADYLLVVGV CLSLNVANII GFTKCKKDAK KQFQQFASQT IASRFQSTVQ SAFTLV
101: NKKDSWLFWW TLYLAAAAWF ILGVFSLIRF QADYLLVVGV CLSLNVANII GFTKCKKDAK KQFQQFASQT IASRFQSTVQ SAFTLV
Arabidopsis Description
ECHGolgi apparatus membrane protein-like protein ECHIDNA [Source:UniProtKB/Swiss-Prot;Acc:Q8LEK2]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.