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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003379.1-P
Bra007455.1-P
Bra014538.1-P
Bra018566.1-P
Bra030769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 Bra018566.1-P AT1G09330.1 21798944
AT4G11220.1 Bra030769.1-P AT1G09330.1 21798944
AT4G11220.1 Bra003379.1-P AT3G59500.1 21798944
AT4G11220.1 Bra007455.1-P AT3G59500.1 21798944
AT4G11220.1 Bra014538.1-P AT3G59500.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX86802 Canola cytosol, nucleus, peroxisome 83.5 68.16
CDY13240 Canola cytosol, peroxisome, plasma membrane 39.0 48.45
Bra000739.1-P Field mustard cytosol 48.0 35.96
AT4G11220.1 Thale cress nucleus 47.0 34.69
Bra019285.1-P Field mustard cytosol 45.0 33.58
KRH59988 Soybean mitochondrion 42.5 33.46
Bra010539.1-P Field mustard cytosol 45.0 33.46
KRH41254 Soybean cytosol, nucleus, plasma membrane 42.0 33.07
Bra013717.1-P Field mustard nucleus 45.5 32.97
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 40.5 32.27
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 40.5 32.27
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 40.0 31.75
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 39.5 31.47
Os01t0226300-01 Rice plasma membrane 28.0 31.46
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 39.0 31.45
TraesCS3A01G278800.1 Wheat golgi 39.0 31.45
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 40.5 31.4
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 40.0 31.37
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 40.0 31.37
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 39.5 31.35
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 39.5 31.23
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 39.0 31.2
Zm00001d012776_P001 Maize extracellular 39.0 30.83
KXG33320 Sorghum cytosol, nucleus, plasma membrane 39.5 30.62
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 38.5 30.56
GSMUA_Achr4P08400_001 Banana cytosol 38.5 30.43
Os01t0736900-01 Rice plasma membrane 38.5 30.43
Zm00001d043551_P003 Maize plasma membrane 39.0 30.35
Os05t0526400-01 Rice plasma membrane 38.0 30.28
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 38.0 30.28
EES19841 Sorghum cytosol, nucleus, plasma membrane 38.5 30.2
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 40.5 30.0
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 40.5 30.0
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 37.0 29.6
Zm00001d038768_P001 Maize extracellular, mitochondrion 37.5 29.53
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 36.5 29.44
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 36.5 29.32
Zm00001d016041_P001 Maize extracellular 33.5 29.13
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 33.0 28.7
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 35.5 27.95
EER89811 Sorghum peroxisome 35.5 27.73
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 32.0 27.59
GSMUA_Achr3P31920_001 Banana cytosol 29.5 26.94
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 38.5 26.92
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 38.0 26.57
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 34.5 26.44
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 33.5 25.77
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 33.5 25.77
KXG31516 Sorghum cytosol, nucleus, plasma membrane 36.5 25.7
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 35.5 25.45
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 33.0 25.38
Os06t0503400-01 Rice plasma membrane 33.5 25.28
HORVU7Hr1G081290.4 Barley plastid 28.5 24.68
HORVU3Hr1G030760.2 Barley mitochondrion 38.0 24.2
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 37.0 24.18
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 38.0 23.6
HORVU7Hr1G075700.2 Barley mitochondrion 33.5 22.33
Bra037369.1-P Field mustard cytosol 27.0 22.22
Bra029827.1-P Field mustard plasma membrane 26.5 22.18
Zm00001d020229_P001 Maize plasma membrane 16.5 21.71
TraesCS1A01G346800.3 Wheat plasma membrane 25.5 20.24
Bra037594.1-P Field mustard plasma membrane 22.5 20.09
GSMUA_Achr3P15760_001 Banana cytosol 14.5 19.33
Bra029878.1-P Field mustard cytosol, peroxisome, plasma membrane 23.0 19.25
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 25.0 19.16
Bra034153.1-P Field mustard plasma membrane 21.0 18.83
Bra003171.1-P Field mustard plasma membrane 18.0 17.73
Bra004291.1-P Field mustard plasma membrane 18.5 17.54
Bra001748.1-P Field mustard plastid 16.5 16.84
Zm00001d020729_P001 Maize plasma membrane 7.5 15.79
Bra007047.1-P Field mustard golgi, plasma membrane, vacuole 16.0 15.61
Bra022426.1-P Field mustard cytosol, plasma membrane, plastid 18.5 15.16
Bra039207.1-P Field mustard plasma membrane 15.0 14.42
Bra040612.1-P Field mustard plasma membrane 13.0 14.21
Bra033951.1-P Field mustard plasma membrane 17.5 11.59
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 6.5 7.22
Protein Annotations
EnsemblPlants:Bra035242.1EnsemblPlants:Bra035242.1-PEnsemblPlantsGene:Bra035242GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:IPR003388InterPro:ReticulonPANTHER:PTHR10994PANTHER:PTHR10994:SF70PFAM:PF02453PFscan:PS50845
TMHMM:TMhelixUniParc:UPI0002546B19UniProt:M4F2E4MapMan:13.7.2.1::
Description
AT4G11220 (E=1e-026) BTI2 | BTI2 (VIRB2-INTERACTING PROTEIN 2)
Coordinates
chrA08:+:9479476..9480575
Molecular Weight (calculated)
22479.4 Da
IEP (calculated)
9.587
GRAVY (calculated)
-0.134
Length
200 amino acids
Sequence
(BLAST)
001: MADERKHEEP LPNLDPTVEV VERESLLDKV SEKPSSPSSL RFTVCSAERG QFTRFSAAEN VRLRWLKRFV LGIAADILMW KNKKVSGGAT SPPKIPQVHI
101: PEEPLLQLAS GLRIEITVAS FIFARLLLEG ISRSSFPFLT LAYIALVLLF TVPLIYDKYE DKVDSYGEKA MAELNKQYAV LDAKMLSKIS RGPLTNKKKD
Best Arabidopsis Sequence Match ( AT4G11220.1 )
(BLAST)
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Arabidopsis Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.