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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:extracellular, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:extracellular
TargetP:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G002680.2
HORVU1Hr1G023500.9
HORVU1Hr1G028520.1
HORVU1Hr1G028870.1
HORVU1Hr1G047990.4
HORVU1Hr1G069080.4
HORVU1Hr1G072070.1
HORVU1Hr1G082010.3
HORVU1Hr1G093680.1
HORVU1Hr1G093720.5
HORVU1Hr1G095120.1
HORVU2Hr1G005680.1
HORVU2Hr1G006030.4
HORVU2Hr1G063710.1
HORVU2Hr1G063720.1
HORVU2Hr1G067170.1
HORVU2Hr1G078290.3
HORVU2Hr1G093180.1
HORVU3Hr1G018940.2
HORVU3Hr1G030760.2
HORVU3Hr1G044700.1
HORVU3Hr1G052820.4
HORVU3Hr1G069970.2
HORVU3Hr1G077280.2
HORVU3Hr1G077290.1
HORVU3Hr1G086830.7
HORVU3Hr1G094550.2
HORVU3Hr1G108010.6
HORVU4Hr1G007060.2
HORVU4Hr1G058460.1
HORVU5Hr1G029200.4
HORVU5Hr1G112790.2
HORVU6Hr1G009670.1
HORVU6Hr1G034030.2
HORVU6Hr1G054760.4
HORVU7Hr1G075380.6
HORVU7Hr1G075700.2
HORVU7Hr1G081290.4
HORVU7Hr1G094010.8
HORVU7Hr1G094050.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 HORVU1Hr1G023500.9 AT1G09330.1 21798944
AT4G11220.1 HORVU1Hr1G028870.1 AT3G59500.1 21798944
AT4G11220.1 HORVU6Hr1G034030.2 AT3G59500.1 21798944
AT4G11220.1 HORVU7Hr1G094010.8 AT3G59500.1 21798944
AT4G11220.1 HORVU7Hr1G094050.2 AT3G59500.1 21798944
AT5G41600.1 HORVU1Hr1G028520.1 AT1G55190.1 21798944
AT5G41600.1 HORVU3Hr1G018940.2 AT1G55190.1 21798944
AT5G41600.1 HORVU1Hr1G069080.4 AT1G77350.1 21798944
AT5G41600.1 HORVU3Hr1G108010.6 AT2G03120.1 21798944
AT5G41600.1 HORVU6Hr1G009670.1 AT2G03120.1 21798944
AT5G41600.1 HORVU2Hr1G078290.3 AT2G39960.1 21798944
AT5G41600.1 HORVU4Hr1G058460.1 AT2G39960.1 21798944
AT5G41600.1 HORVU2Hr1G005680.1 AT2G46890.1 21798944
AT5G41600.1 HORVU2Hr1G093180.1 AT2G46890.1 21798944
AT5G41600.1 HORVU1Hr1G093680.1 AT3G02420.1 21798944
AT5G41600.1 HORVU1Hr1G093720.5 AT3G02420.1 21798944
AT5G41600.1 HORVU1Hr1G095120.1 AT3G02420.1 21798944
AT5G41600.1 HORVU2Hr1G063710.1 AT3G02420.1 21798944
AT5G41600.1 HORVU2Hr1G063720.1 AT3G02420.1 21798944
AT5G41600.1 HORVU2Hr1G067170.1 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G044700.1 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G052820.4 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G077280.2 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G077290.1 AT3G02420.1 21798944
AT5G41600.1 HORVU4Hr1G007060.2 AT3G02420.1 21798944
AT5G41600.1 HORVU5Hr1G029200.4 AT3G02420.1 21798944
AT5G41600.1 HORVU6Hr1G054760.4 AT3G02420.1 21798944
AT5G41600.1 HORVU0Hr1G002680.2 AT3G07950.1 21798944
AT5G41600.1 HORVU2Hr1G006030.4 AT3G07950.1 21798944
AT5G41600.1 HORVU3Hr1G094550.2 AT3G27080.1 21798944
AT5G41600.1 HORVU7Hr1G075380.6 AT3G27080.1 21798944
AT5G41600.1 HORVU1Hr1G072070.1 AT3G46060.1 21798944
AT5G41600.1 HORVU3Hr1G086830.7 AT3G46060.1 21798944
AT5G41600.1 HORVU5Hr1G112790.2 AT3G46060.1 21798944
AT5G41600.1 HORVU1Hr1G028870.1 AT3G59500.1 21798944
AT5G41600.1 HORVU6Hr1G034030.2 AT3G59500.1 21798944
AT5G41600.1 HORVU7Hr1G094010.8 AT3G59500.1 21798944
AT5G41600.1 HORVU7Hr1G094050.2 AT3G59500.1 21798944
AT5G41600.1 HORVU1Hr1G082010.3 AT5G41600.1 21798944
AT5G41600.1 HORVU3Hr1G030760.2 AT5G41600.1 21798944
AT5G41600.1 HORVU3Hr1G069970.2 AT5G41600.1 21798944
AT5G41600.1 HORVU7Hr1G075700.2 AT5G41600.1 21798944
AT5G41600.1 HORVU7Hr1G081290.4 AT5G41600.1 21798944
AT5G41600.1 HORVU1Hr1G047990.4 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 92.64 82.31
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 92.64 82.31
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 90.91 80.77
HORVU7Hr1G075700.2 Barley mitochondrion 96.1 74.0
Os06t0503400-01 Rice plasma membrane 77.49 67.55
EER89811 Sorghum peroxisome 74.46 67.19
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 72.73 64.37
KRH41254 Soybean cytosol, nucleus, plasma membrane 46.32 42.13
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 45.89 42.06
Solyc03g007740.2.1 Tomato nucleus 45.89 41.57
KRH59988 Soybean mitochondrion 45.45 41.34
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 48.05 41.11
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 44.59 40.87
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 45.02 40.78
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 44.59 40.71
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 44.59 40.71
Solyc01g095200.2.1 Tomato plastid 46.32 40.68
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 47.19 40.37
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 45.89 40.0
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 43.29 39.22
CDY13240 Canola cytosol, peroxisome, plasma membrane 27.27 39.13
KRG99174 Soybean endoplasmic reticulum, plasma membrane 14.72 39.08
CDX90792 Canola cytosol, peroxisome, plasma membrane 45.02 38.95
Bra019285.1-P Field mustard cytosol 45.02 38.81
Bra010539.1-P Field mustard cytosol 45.02 38.66
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 41.99 38.65
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 41.99 38.65
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 41.99 38.65
CDX79993 Canola cytosol, peroxisome, plasma membrane 41.99 38.65
Bra000739.1-P Field mustard cytosol 44.59 38.58
KRH40357 Soybean endoplasmic reticulum 42.86 38.52
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 42.42 38.43
AT4G11220.1 Thale cress nucleus 45.02 38.38
CDY24806 Canola cytosol 45.45 38.32
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 41.56 38.25
CDY57657 Canola cytosol, nucleus, plasma membrane 45.45 38.18
CDY10954 Canola cytosol 44.59 38.15
Bra013717.1-P Field mustard nucleus 45.45 38.04
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 41.99 38.04
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 43.29 38.02
CDY38194 Canola cytosol, nucleus, plasma membrane 41.13 38.0
CDY42012 Canola cytosol, peroxisome, plasma membrane 41.13 37.85
KRH00872 Soybean endoplasmic reticulum 42.42 37.84
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 41.99 37.74
CDY44123 Canola cytosol, nucleus, plasma membrane 45.02 37.68
CDY41666 Canola cytosol 45.02 37.68
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 40.69 37.6
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 40.69 37.6
AT4G23630.2 Thale cress nucleus 44.59 37.45
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 40.26 37.2
KRH06560 Soybean endoplasmic reticulum 41.13 37.11
CDY52012 Canola cytosol, peroxisome, plasma membrane 40.26 36.61
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 38.96 35.43
CDY53913 Canola cytosol, peroxisome, plasma membrane 38.96 35.43
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 38.96 35.29
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 38.53 35.18
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 38.53 35.04
CDY62522 Canola cytosol 12.12 35.0
KRH35223 Soybean cytosol, nucleus, plasma membrane 37.23 34.4
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 38.96 33.21
KRH48008 Soybean cytosol, peroxisome, plasma membrane 44.59 32.8
HORVU1Hr1G017470.2 Barley cytosol, endoplasmic reticulum, nucleus 34.2 31.98
CDY05135 Canola mitochondrion 43.29 31.95
VIT_02s0025g00590.t01 Wine grape mitochondrion 8.23 31.67
HORVU3Hr1G030760.2 Barley mitochondrion 42.86 31.53
CDY48510 Canola cytosol 32.47 30.86
CDY07184 Canola cytosol, peroxisome, plasma membrane 32.47 30.86
Bra037369.1-P Field mustard cytosol 32.47 30.86
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 34.63 30.65
AT4G01230.2 Thale cress cytosol 32.03 30.33
HORVU3Hr1G064240.2 Barley plasma membrane 27.71 29.22
HORVU5Hr1G101680.2 Barley cytosol, endoplasmic reticulum, peroxisome 32.9 29.12
Bra035242.1-P Field mustard cytosol 24.68 28.5
CDX86802 Canola cytosol, nucleus, peroxisome 29.0 27.35
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 20.78 26.67
KRG91601 Soybean mitochondrion 37.23 25.29
HORVU4Hr1G050020.1 Barley plastid 26.84 23.94
CDX89122 Canola extracellular, mitochondrion 15.15 22.88
HORVU1Hr1G083110.3 Barley plastid 27.71 21.92
HORVU2Hr1G060770.16 Barley plasma membrane 32.03 19.32
HORVU2Hr1G122310.2 Barley cytosol, plasma membrane 14.29 17.74
HORVU3Hr1G008400.1 Barley cytosol, peroxisome 25.11 16.67
Protein Annotations
EnsemblPlants:HORVU7Hr1G081290.4EnsemblPlantsGene:HORVU7Hr1G081290GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388InterPro:Reticulon
PANTHER:PTHR10994PANTHER:PTHR10994:SF73PFAM:PF02453PFscan:PS50845SEG:segTMHMM:TMhelix
UniParc:UPI000B4831E6UniProt:A0A287X2F2MapMan:13.7.2.1:::
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287X2F2]
Coordinates
chrchr7H:+:483571811..483574754
Molecular Weight (calculated)
25083.6 Da
IEP (calculated)
9.973
GRAVY (calculated)
-0.061
Length
231 amino acids
Sequence
(BLAST)
001: WPIQPRRPSP RPPXPPTPAA PAEGAPPLSA EPPASADASP EKAAPPASAP DTTVRSRGFR LLGEDTSVHK VLGGGKTADV LLWKDKKTTA VVIGGTTVIW
101: VLFEVLDYHL LTLLSHVMIG VLAILFVWSK AMTFIKKSPP DIPVVEIPED LAVNVSRALR NDVNRSLHLF REIVIAAVLM IHTVPILYDK YQDKVDHFAG
201: KAHTEACKHY EVLDQKVLSK IPRGPAKTKK T
Best Arabidopsis Sequence Match ( AT2G46170.1 )
(BLAST)
001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG
Arabidopsis Description
RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.