Factsheet for HORVU4Hr1G050020.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G171300.2	Wheat	peroxisome	84.56	96.48
TraesCS4A01G135900.1	Wheat	peroxisome	84.56	96.48
TraesCS4B01G169100.2	Wheat	cytosol, peroxisome, vacuole	84.17	96.04
EER92307	Sorghum	peroxisome	70.66	80.26
Zm00001d047517_P001	Maize	peroxisome	69.5	78.95
Os03t0336600-02	Rice	plasma membrane	70.27	78.79
GSMUA_Achr3P09820_001	Banana	cytosol, peroxisome, plasma membrane	56.76	63.91
Solyc06g049060.2.1	Tomato	mitochondrion, plasma membrane	46.33	63.16
KRH18469	Soybean	plasma membrane	42.86	56.06
KRG93546	Soybean	plasma membrane	42.86	55.78
PGSC0003DMT400042905	Potato	cytosol, peroxisome, plasma membrane	50.97	55.46
Bra034153.1-P	Field mustard	plasma membrane	44.79	52.02
CDY36282	Canola	plasma membrane	44.4	51.57
Bra029878.1-P	Field mustard	cytosol, peroxisome, plasma membrane	44.79	48.54
CDY00975	Canola	cytosol, endoplasmic reticulum, peroxisome	44.4	48.12
AT3G10915.7	Thale cress	plasma membrane	46.33	47.81
CDY08567	Canola	cytosol	44.4	47.72
HORVU2Hr1G122310.2	Barley	cytosol, plasma membrane	22.78	31.72
HORVU3Hr1G064240.2	Barley	plasma membrane	26.25	31.05
VIT_13s0067g02960.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	36.68	29.05
HORVU3Hr1G069970.2	Barley	cytosol, nucleus, plasma membrane	27.03	27.45
HORVU7Hr1G081290.4	Barley	plastid	23.94	26.84
HORVU7Hr1G075700.2	Barley	mitochondrion	29.73	25.67
HORVU1Hr1G017470.2	Barley	cytosol, endoplasmic reticulum, nucleus	24.32	25.51
HORVU5Hr1G101680.2	Barley	cytosol, endoplasmic reticulum, peroxisome	23.55	23.37
HORVU1Hr1G082010.3	Barley	cytosol, nucleus, plasma membrane, plastid	23.55	23.37
HORVU1Hr1G083110.3	Barley	plastid	25.87	22.95
HORVU3Hr1G030760.2	Barley	mitochondrion	27.41	22.61
HORVU3Hr1G008400.1	Barley	cytosol, peroxisome	25.87	19.25
HORVU2Hr1G060770.16	Barley	plasma membrane	27.8	18.8

Protein Annotations

EnsemblPlants:HORVU4Hr1G050020.1	EnsemblPlantsGene:HORVU4Hr1G050020	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388	InterPro:Reticulon
PANTHER:PTHR10994	PANTHER:PTHR10994:SF67	PFAM:PF02453	PFscan:PS50845	SEG:seg	TMHMM:TMhelix
UniParc:UPI000B47180E	UniProt:A0A287NZK0	MapMan:13.7.2.1	:	:	:

Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287NZK0]

Coordinates

chrchr4H:-:407077606..407079698

Molecular Weight (calculated)

28384.7 Da

IEP (calculated)

8.487

GRAVY (calculated)

0.355

Length

259 amino acids

Sequence
(BLAST)

001: CPISFSPVSG LFSFPKAPPS LLSDPATKQG LAMEASASGA ESANAGIEGS ADPCSSAGGG YRLSVHQIVG GGKAADIILW KCRRATVGVI FGATIAWWLF
101: EKSELSFLTI CCDVLLILII VQLIWVKISG LLNKQPRQLP ELVLSEEMVN NAAASFRVKV NNMLMIAHDI TLGKDFRLFF QVVSVLWLLS VIGNFFSSVT
201: LAYIGAIALV TVPVLYHRHQ EHVDRYAGMV HRNISRHYKI VDENVISRLP RSFIRDKDD

Best Arabidopsis Sequence Match ( AT3G10915.2 )
(BLAST)

001: MDSLSDIDGD FDGRNEGGSS SDYRLLGRQI TVHQFMGGGK AADLLLWRRR HLSLGVIIIS TVAWLIFEFS GLPFLSVSSD VLLIVIMISF VHARVSAFRN
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS

Arabidopsis Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP93]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.