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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
ChloroP:plastid
MultiLoc:mitochondrion
TargetP:plastid
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1B01G393700.1 Wheat cytosol, peroxisome, plasma membrane 68.49 85.47
TraesCS1A01G373800.1 Wheat cytosol, peroxisome, plasma membrane 67.81 84.62
TraesCS1D01G380400.1 Wheat cytosol, peroxisome, plasma membrane 67.47 84.19
Zm00001d038910_P001 Maize plasma membrane 52.4 67.4
EES19907 Sorghum cytosol, peroxisome, plasma membrane 52.05 67.26
HORVU3Hr1G064240.2 Barley plasma membrane 42.47 56.62
GSMUA_Achr8P31770_001 Banana peroxisome 39.38 51.57
PGSC0003DMT400078544 Potato endoplasmic reticulum, plasma membrane, vacuole 24.66 46.75
GSMUA_Achr2P07230_001 Banana golgi, plasma membrane, vacuole 32.88 45.71
Solyc05g008890.2.1 Tomato plasma membrane 32.88 43.44
KRH39144 Soybean plasma membrane 32.53 42.79
VIT_17s0000g03260.t01 Wine grape plasma membrane 30.82 42.45
KRH35899 Soybean plasma membrane 30.48 41.98
KRH48561 Soybean plasma membrane 31.85 41.89
CDY66516 Canola endoplasmic reticulum, extracellular 26.03 40.86
Solyc03g119190.2.1 Tomato plasma membrane 30.48 40.64
PGSC0003DMT400014404 Potato cytosol, plasma membrane, vacuole 13.01 40.43
CDY67571 Canola plasma membrane 29.11 37.95
CDX75962 Canola plasma membrane 28.77 37.5
Bra037594.1-P Field mustard plasma membrane 28.77 37.5
CDY51936 Canola endoplasmic reticulum, peroxisome, plasma membrane 28.42 37.05
AT3G18260.1 Thale cress plasma membrane 28.42 36.89
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 30.14 34.51
HORVU1Hr1G017470.2 Barley cytosol, endoplasmic reticulum, nucleus 28.42 33.6
GSMUA_AchrUn_... Banana golgi 39.04 32.39
CDX81500 Canola plasma membrane 21.92 30.77
Bra004291.1-P Field mustard plasma membrane 21.58 29.86
CDX96038 Canola plasma membrane 21.58 29.86
AT1G68230.2 Thale cress plasma membrane 21.92 29.77
CDY01898 Canola plasma membrane 21.23 29.25
HORVU7Hr1G075700.2 Barley mitochondrion 29.11 28.33
HORVU7Hr1G081290.4 Barley plastid 21.92 27.71
HORVU3Hr1G030760.2 Barley mitochondrion 29.45 27.39
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 24.32 27.2
HORVU5Hr1G101680.2 Barley cytosol, endoplasmic reticulum, peroxisome 24.32 27.2
VIT_01s0011g04030.t01 Wine grape cytosol 33.9 26.47
HORVU2Hr1G122310.2 Barley cytosol, plasma membrane 16.78 26.34
HORVU3Hr1G008400.1 Barley cytosol, peroxisome 31.16 26.15
HORVU4Hr1G050020.1 Barley plastid 22.95 25.87
Bra033951.1-P Field mustard plasma membrane 22.26 21.52
HORVU2Hr1G060770.16 Barley plasma membrane 28.08 21.41
CDY12701 Canola plasma membrane 21.92 21.19
Protein Annotations
EnsemblPlants:HORVU1Hr1G083110.3EnsemblPlantsGene:HORVU1Hr1G083110GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:IPR003388
InterPro:ReticulonPANTHER:PTHR10994PANTHER:PTHR10994:SF81PFAM:PF02453PFscan:PS50845SEG:seg
TMHMM:TMhelixUniParc:UPI000B477990UniProt:A0A287GIF6MapMan:13.7.2.1::
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287GIF6]
Coordinates
chrchr1H:-:531236890..531238167
Molecular Weight (calculated)
32101.9 Da
IEP (calculated)
10.094
GRAVY (calculated)
0.030
Length
292 amino acids
Sequence
(BLAST)
001: RSPDHTCRTR TPGERQRWRR LGEPWFPTSG ATPSPTTKAA ARPTSASSAG SGRCTGSSAA AKVRRPTRSS IIYLYIPSES RAHRVISELF QFLNLNRQCG
101: GVAVADVLLW RDRNLSAGML AGATAVWFLF DVAEYNAVTL LCHAALLGML LLFLWSVTAP LFDRAPPRVP EVIVSEHAFG EAAMAVHRKL ERSVAVLYDI
201: ACGKDLKKFL SVIGSLWVVA VIGDNCSFTT LVYVGFLCAL TLPALYERYG TEVDHLVAKG GEDLKKFYRK VDANVLDKIP RGPVKSKRAH FH
Best Arabidopsis Sequence Match ( AT2G46170.1 )
(BLAST)
001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG
Arabidopsis Description
RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.