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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, cytosol

Predictor Summary:
  • cytosol 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane
Any Predictor:cytosol, plasma membrane
MultiLoc:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G545200.1 Wheat plasma membrane 66.67 62.63
TraesCS2A01G544000.1 Wheat plasma membrane 65.59 61.31
TraesCS2B01G574200.2 Wheat plasma membrane 65.59 61.31
Os04t0670000-01 Rice plasma membrane 58.6 54.77
Zm00001d026575_P001 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 54.3 51.01
Zm00001d001901_P002 Maize plasma membrane 53.76 50.51
EES11624 Sorghum plasma membrane 53.76 50.51
GSMUA_Achr7P05440_001 Banana peroxisome, plasma membrane, vacuole 43.01 35.87
KRH35738 Soybean endoplasmic reticulum 36.02 32.84
KRG91024 Soybean plasma membrane 35.48 32.35
Bra001748.1-P Field mustard plastid 33.87 32.14
CDX82294 Canola plastid 33.87 32.14
VIT_03s0180g00170.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 35.48 31.88
PGSC0003DMT400066222 Potato plasma membrane 34.95 31.86
CDY22970 Canola plasma membrane 32.8 31.12
CDX99221 Canola plasma membrane 33.87 31.03
AT2G15280.1 Thale cress plasma membrane 33.33 30.85
CDY46172 Canola plastid 33.33 30.69
CDY22971 Canola plasma membrane 32.26 30.61
Solyc01g107620.2.1 Tomato plasma membrane 34.95 29.68
Bra040612.1-P Field mustard plasma membrane 28.49 28.96
GSMUA_Achr4P20190_001 Banana cytosol, plastid 43.55 28.72
AT3G19460.3 Thale cress plasma membrane 36.02 28.63
CDY48222 Canola cytosol, endoplasmic reticulum, plasma membrane 30.11 27.59
CDX71213 Canola plasma membrane 30.11 27.59
Bra022426.1-P Field mustard cytosol, plasma membrane, plastid 33.33 25.41
HORVU4Hr1G050020.1 Barley plastid 31.72 22.78
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 24.19 17.65
HORVU1Hr1G017470.2 Barley cytosol, endoplasmic reticulum, nucleus 22.58 17.0
HORVU1Hr1G083110.3 Barley plastid 26.34 16.78
HORVU3Hr1G064240.2 Barley plasma membrane 18.82 15.98
HORVU7Hr1G075700.2 Barley mitochondrion 25.27 15.67
HORVU5Hr1G101680.2 Barley cytosol, endoplasmic reticulum, peroxisome 20.43 14.56
HORVU7Hr1G081290.4 Barley plastid 17.74 14.29
HORVU3Hr1G030760.2 Barley mitochondrion 23.12 13.69
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 18.28 13.03
HORVU2Hr1G060770.16 Barley plasma membrane 22.04 10.71
HORVU3Hr1G008400.1 Barley cytosol, peroxisome 19.35 10.34
Protein Annotations
EnsemblPlants:HORVU2Hr1G122310.2EnsemblPlantsGene:HORVU2Hr1G122310GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:IPR003388
InterPro:ReticulonPANTHER:PTHR10994PANTHER:PTHR10994:SF65PFAM:PF02453PFscan:PS50845TMHMM:TMhelix
UniParc:UPI000B467316UniProt:A0A287JQW1MapMan:35.1:::
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287JQW1]
Coordinates
chrchr2H:+:753015953..753016876
Molecular Weight (calculated)
20572.7 Da
IEP (calculated)
10.089
GRAVY (calculated)
0.465
Length
186 amino acids
Sequence
(BLAST)
001: KTSVIHSQVT LVDEILDLSP INRKGGSICV IKCSTFIFQH GKSITTLRSL LQLVTTAITS TVVCRPLPPL PNLEVSDVVV QKAADRALVW VNKVLAVAHD
101: IAIKRDRTVF IKVIMVLWVV SCIGMLFNFF TLIYIGALLA LLVPPVYERH QEVIDEKVGL AHSILSRHLN TVISKTGQPT KQKKAE
Best Arabidopsis Sequence Match ( AT3G19460.1 )
(BLAST)
001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.