CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	endoplasmic reticulum, plasma membrane, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22970	Canola	plasma membrane	98.47	98.47
Bra001748.1-P	Field mustard	plastid	97.45	97.45
CDX82294	Canola	plastid	97.45	97.45
CDY46172	Canola	plastid	88.78	86.14
CDX99221	Canola	plasma membrane	87.76	84.73
AT3G19460.3	Thale cress	plasma membrane	82.14	68.8
GSMUA_Achr7P05440_001	Banana	peroxisome, plasma membrane, vacuole	52.55	46.19
Zm00001d001901_P002	Maize	plasma membrane	46.43	45.96
EES11624	Sorghum	plasma membrane	46.43	45.96
CDX71213	Canola	plasma membrane	47.45	45.81
CDY48222	Canola	cytosol, endoplasmic reticulum, plasma membrane	47.45	45.81
Zm00001d026575_P001	Maize	mitochondrion, peroxisome, plasma membrane, plastid, vacuole	45.41	44.95
TraesCS2A01G544000.1	Wheat	plasma membrane	45.41	44.72
Os04t0670000-01	Rice	plasma membrane	45.41	44.72
TraesCS2D01G545200.1	Wheat	plasma membrane	44.39	43.94
TraesCS2B01G574200.2	Wheat	plasma membrane	44.39	43.72
GSMUA_Achr4P20190_001	Banana	cytosol, plastid	52.55	36.52
CDX67589	Canola	golgi, plasma membrane, vacuole	35.2	33.99
CDY51584	Canola	plasma membrane	34.18	33.0
HORVU2Hr1G122310.2	Barley	cytosol, plasma membrane	30.61	32.26
CDX78209	Canola	golgi, plasma membrane, vacuole	33.67	32.2
CDX73507	Canola	cytosol, golgi, plasma membrane	33.16	31.71
CDY34396	Canola	cytosol, endoplasmic reticulum, nucleus	35.2	27.49
CDY08353	Canola	cytosol, endoplasmic reticulum, nucleus	34.69	27.2
CDY36282	Canola	plasma membrane	30.61	26.91
CDY66516	Canola	endoplasmic reticulum, extracellular	25.51	26.88
CDY38194	Canola	cytosol, nucleus, plasma membrane	34.18	26.8
CDY00975	Canola	cytosol, endoplasmic reticulum, peroxisome	32.65	26.78
CDY08567	Canola	cytosol	32.65	26.56
CDY25557	Canola	cytosol, endoplasmic reticulum, nucleus	33.67	26.29
CDX79993	Canola	cytosol, peroxisome, plasma membrane	33.16	25.9
CDY42012	Canola	cytosol, peroxisome, plasma membrane	32.65	25.5
CDY44123	Canola	cytosol, nucleus, plasma membrane	35.71	25.36
CDY57657	Canola	cytosol, nucleus, plasma membrane	35.2	25.09
CDY51936	Canola	endoplasmic reticulum, peroxisome, plasma membrane	28.57	25.0
CDY67571	Canola	plasma membrane	28.57	25.0
CDY52012	Canola	cytosol, peroxisome, plasma membrane	32.14	24.8
CDY08616	Canola	plasma membrane	30.1	24.69
CDX96038	Canola	plasma membrane	26.53	24.64
CDX75962	Canola	plasma membrane	28.06	24.55
CDX81500	Canola	plasma membrane	26.02	24.52
CDY10954	Canola	cytosol	33.67	24.44
CDY53913	Canola	cytosol, peroxisome, plasma membrane	31.63	24.41
CDX90792	Canola	cytosol, peroxisome, plasma membrane	33.16	24.34
CDY01898	Canola	plasma membrane	26.02	24.06
CDY00916	Canola	plasma membrane	29.08	23.85
CDY13240	Canola	cytosol, peroxisome, plasma membrane	19.39	23.6
CDY41666	Canola	cytosol	33.16	23.55
CDY24806	Canola	cytosol	32.65	23.36
CDY62522	Canola	cytosol	9.18	22.5
CDY07184	Canola	cytosol, peroxisome, plasma membrane	26.53	21.4
CDY48510	Canola	cytosol	26.02	20.99
CDY05135	Canola	mitochondrion	33.16	20.77
CDY46067	Canola	plasma membrane	21.94	20.67
CDX76854	Canola	plasma membrane	20.92	19.81
CDX89122	Canola	extracellular, mitochondrion	14.29	18.3
CDY12701	Canola	plasma membrane	26.02	16.89
CDX86802	Canola	cytosol, nucleus, peroxisome	20.92	16.73
CDX82165	Canola	endoplasmic reticulum, peroxisome, plasma membrane, plastid	19.9	15.73
CDY56712	Canola	mitochondrion	28.06	15.49

Protein Annotations

MapMan:13.7.2.1	GO:A0A078GC76	UniProt:A0A078GC76	EnsemblPlants:CDY22971	ProteinID:CDY22971	ProteinID:CDY22971.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00021382001	InterPro:IPR003388	PFAM:PF02453	PFscan:PS50845
PANTHER:PTHR10994	PANTHER:PTHR10994:SF65	InterPro:Reticulon	TMHMM:TMhelix	UniParc:UPI0004EE426D	SEG:seg

Description

BnaC03g40980DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078GC76]

Coordinates

chrLK032138:+:298112..299832

Molecular Weight (calculated)

21932.9 Da

IEP (calculated)

9.338

GRAVY (calculated)

0.446

Length

196 amino acids

Sequence
(BLAST)

001: MGDSASSSSS SSVHKSLVAD LLLWRNRTGA VILLVSSTGF WFLFERAGYN LLSFVSNVLL LLVAILFLWA KSASLLNRPL PPFPNMEIPE EFAIKSADEI
101: RILINHVLSI PSDITIARNP IRLLQVSFVL WAISYVGTLI NSLTLVYIVV LLSLSVPVVY ENYQEHIDDK LSSTSEVIRN ISRKIPMPVS KEKKYQ

Best Arabidopsis Sequence Match ( AT3G19460.1 )
(BLAST)

001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ

Arabidopsis Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.