Factsheet for Zm00001d001901_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
ChloroP:	plastid
MultiLoc:	peroxisome
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11624	Sorghum	plasma membrane	91.92	91.92
Zm00001d026575_P001	Maize	mitochondrion, peroxisome, plasma membrane, plastid, vacuole	91.92	91.92
Os04t0670000-01	Rice	plasma membrane	82.83	82.41
TraesCS2B01G574200.2	Wheat	plasma membrane	75.25	74.87
TraesCS2D01G545200.1	Wheat	plasma membrane	74.75	74.75
TraesCS2A01G544000.1	Wheat	plasma membrane	74.75	74.37
GSMUA_Achr7P05440_001	Banana	peroxisome, plasma membrane, vacuole	66.67	59.19
HORVU2Hr1G122310.2	Barley	cytosol, plasma membrane	50.51	53.76
PGSC0003DMT400066222	Potato	plasma membrane	53.54	51.96
KRG91024	Soybean	plasma membrane	52.02	50.49
VIT_03s0180g00170.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	52.53	50.24
KRH35738	Soybean	endoplasmic reticulum	51.01	49.51
CDX99221	Canola	plasma membrane	50.0	48.77
CDY46172	Canola	plastid	49.49	48.51
Solyc01g107620.2.1	Tomato	plasma membrane	53.54	48.4
CDX82294	Canola	plastid	47.47	47.96
Bra001748.1-P	Field mustard	plastid	46.97	47.45
CDY22970	Canola	plasma membrane	46.46	46.94
GSMUA_Achr4P20190_001	Banana	cytosol, plastid	66.67	46.81
CDY22971	Canola	plasma membrane	45.96	46.43
AT2G15280.1	Thale cress	plasma membrane	43.94	43.28
AT3G19460.3	Thale cress	plasma membrane	49.49	41.88
Bra022426.1-P	Field mustard	cytosol, plasma membrane, plastid	48.99	39.75
CDX71213	Canola	plasma membrane	39.9	38.92
CDY48222	Canola	cytosol, endoplasmic reticulum, plasma membrane	39.39	38.42
Bra040612.1-P	Field mustard	plasma membrane	35.35	38.25
Zm00001d020729_P001	Maize	plasma membrane	15.66	32.63
Zm00001d042846_P001	Maize	plasma membrane	33.33	31.43
Zm00001d047517_P001	Maize	peroxisome	35.86	31.14
Zm00001d016041_P001	Maize	extracellular	34.34	29.57
Zm00001d038910_P001	Maize	plasma membrane	32.32	28.19
Zm00001d043551_P003	Maize	plasma membrane	35.35	27.24
Zm00001d037453_P001	Maize	cytosol, peroxisome, plasma membrane	35.86	27.2
Zm00001d039213_P001	Maize	golgi, plasma membrane, plastid	31.82	26.92
Zm00001d038768_P001	Maize	extracellular, mitochondrion	34.34	26.77
Zm00001d011631_P001	Maize	golgi, peroxisome, plasma membrane	29.8	26.7
Zm00001d020229_P001	Maize	plasma membrane	20.2	26.32
Zm00001d012776_P001	Maize	extracellular	33.33	26.09
Zm00001d018781_P001	Maize	extracellular, mitochondrion	31.82	25.93
Zm00001d034313_P001	Maize	cytosol, nucleus, plasma membrane	32.32	25.81
Zm00001d037848_P008	Maize	endoplasmic reticulum, nucleus, peroxisome	32.32	25.4
Zm00001d008590_P001	Maize	plastid	16.67	24.81
Zm00001d008982_P001	Maize	cytosol, nucleus, plasma membrane	33.84	24.01
Zm00001d039316_P001	Maize	cytosol, nucleus, plasma membrane	33.33	21.57

Protein Annotations

EntrezGene:100273152	MapMan:13.7.2.1	UniProt:B4FT92	EMBL:BT040330	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021
InterPro:IPR003388	ProteinID:ONM12357.1	PFAM:PF02453	PFscan:PS50845	PANTHER:PTHR10994	PANTHER:PTHR10994:SF65
InterPro:Reticulon	TMHMM:TMhelix	UniParc:UPI00017B8281	EnsemblPlantsGene:Zm00001d001901	EnsemblPlants:Zm00001d001901_P002	EnsemblPlants:Zm00001d001901_T002
SEG:seg	:	:	:	:	:

Description

Reticulon-like protein B11

Coordinates

chr2:-:2608019..2612382

Molecular Weight (calculated)

21775.2 Da

IEP (calculated)

10.368

GRAVY (calculated)

0.627

Length

198 amino acids

Sequence
(BLAST)

001: MATGPRSLHA LLGGGAVADL LLCRRRNASA AAVVGATAVW FVFERAGYSF PSVLSNALLL LVAILFFWAK SALLLNRPLP PLPNLEVSDA VVEKAADYAL
101: VWINRLLAVG HDIAIKRNRK VFIKVILILW LVSFVGMLFN FLTLIYIGVM LSLLVPPLYE KYQDQVDEKV GVAHSIISRH INTIVIRAGQ SAKEKKTE

Best Arabidopsis Sequence Match ( AT3G19460.1 )
(BLAST)

001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ

Arabidopsis Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.