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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 2
  • mitochondrion 3
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:plasma membrane
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plasma membrane
 plasma membrane: 18260611
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d026575_P001 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 85.43 85.86
EES11624 Sorghum plasma membrane 84.92 85.35
Zm00001d001901_P002 Maize plasma membrane 82.41 82.83
TraesCS2B01G574200.2 Wheat plasma membrane 78.89 78.89
TraesCS2D01G545200.1 Wheat plasma membrane 78.39 78.79
TraesCS2A01G544000.1 Wheat plasma membrane 77.89 77.89
GSMUA_Achr7P05440_001 Banana peroxisome, plasma membrane, vacuole 65.83 58.74
HORVU2Hr1G122310.2 Barley cytosol, plasma membrane 54.77 58.6
VIT_03s0180g00170.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 54.77 52.66
PGSC0003DMT400066222 Potato plasma membrane 53.77 52.45
KRG91024 Soybean plasma membrane 53.77 52.45
KRH35738 Soybean endoplasmic reticulum 51.26 50.0
Solyc01g107620.2.1 Tomato plasma membrane 53.77 48.86
CDX99221 Canola plasma membrane 48.74 47.78
CDY46172 Canola plastid 48.24 47.52
CDX82294 Canola plastid 46.23 46.94
GSMUA_Achr4P20190_001 Banana cytosol, plastid 66.33 46.81
Bra001748.1-P Field mustard plastid 45.73 46.43
CDY22971 Canola plasma membrane 44.72 45.41
CDY22970 Canola plasma membrane 44.72 45.41
AT2G15280.1 Thale cress plasma membrane 42.71 42.29
AT3G19460.3 Thale cress plasma membrane 48.24 41.03
Bra022426.1-P Field mustard cytosol, plasma membrane, plastid 47.74 38.93
CDX71213 Canola plasma membrane 37.69 36.95
CDY48222 Canola cytosol, endoplasmic reticulum, plasma membrane 37.19 36.45
Os04t0367400-02 Rice plasma membrane 38.69 36.15
Bra040612.1-P Field mustard plasma membrane 32.66 35.52
Os01t0226300-01 Rice plasma membrane 29.65 33.15
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 37.69 32.61
Os01t0851300-01 Rice golgi, plasma membrane, vacuole 33.17 32.51
Os03t0336600-02 Rice plasma membrane 37.69 32.47
Os01t0139000-00 Rice plasma membrane 32.66 30.52
Os01t0736900-01 Rice plasma membrane 36.18 28.46
Os05t0526400-01 Rice plasma membrane 35.68 28.29
Os05t0312500-01 Rice plasma membrane 35.18 27.89
Os06t0503400-01 Rice plasma membrane 36.18 27.17
Os03t0781700-01 Rice cytosol, peroxisome, plasma membrane 33.67 27.13
Os01t0691400-00 Rice cytosol, peroxisome 30.65 26.41
Os07t0142000-01 Rice plasma membrane 32.16 26.02
Protein Annotations
MapMan:13.7.2.1EntrezGene:4337349EMBL:AK071792ProteinID:BAF16123.1ProteinID:BAS91549.1ProteinID:CAE02821.2
ProteinID:EEE61878.1GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783
GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388EnsemblPlantsGene:Os04g0670000EnsemblPlants:Os04t0670000-01
PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF65UniProt:Q7XR59InterPro:Reticulon
TMHMM:TMhelixUniParc:UPI000021C690RefSeq:XP_015634094.1SEG:seg::
Description
Reticulon family protein. (Os04t0670000-01)
Coordinates
chr4:+:34166490..34169404
Molecular Weight (calculated)
22080.5 Da
IEP (calculated)
10.421
GRAVY (calculated)
0.493
Length
199 amino acids
Sequence
(BLAST)
001: MATTSRRSLH ALLGGGAVAD LVLWRRRNVS AAAVAGATAV WFLFERAGYS FPSVMANALL LLVAILFFWA KSASLLNRPL PPLPKLEVSD VVVEKAADRA
101: LVWINKVLAV GHDIAIKRDR SVFIKVILIL WVVSYIGMLF NFLTLIYIGV MFSLLVPPLY EKYQDQVDEK IGMAHSVLSR HLDTIISKTG ESTKQKKTE
Best Arabidopsis Sequence Match ( AT3G19460.1 )
(BLAST)
001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.