Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G017470.2 | Barley | cytosol, endoplasmic reticulum, nucleus | 84.06 | 85.43 |
| TraesCS1B01G099200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 83.27 | 83.6 |
| KXG21632 | Sorghum | nucleus, peroxisome, plasma membrane | 82.47 | 83.47 |
| TraesCS1A01G081500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 82.87 | 82.87 |
| Zm00001d037848_P008 | Maize | endoplasmic reticulum, nucleus, peroxisome | 81.67 | 81.35 |
| TraesCS1D01G083100.2 | Wheat | mitochondrion | 82.87 | 71.97 |
| GSMUA_Achr10P... | Banana | golgi, peroxisome, plasma membrane | 60.96 | 61.69 |
| GSMUA_Achr6P15870_001 | Banana | golgi, peroxisome, plasma membrane | 58.96 | 59.68 |
| GSMUA_Achr5P07570_001 | Banana | golgi, peroxisome, plasma membrane | 57.37 | 58.06 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, peroxisome | 45.42 | 57.58 |
| Os01t0736900-01 | Rice | plasma membrane | 53.39 | 52.96 |
| Os05t0526400-01 | Rice | plasma membrane | 51.79 | 51.79 |
| Os01t0226300-01 | Rice | plasma membrane | 36.26 | 51.12 |
| Solyc06g082740.2.1 | Tomato | nucleus | 43.43 | 47.6 |
| Solyc09g055250.2.1 | Tomato | cytosol, endoplasmic reticulum, peroxisome | 46.22 | 47.54 |
| PGSC0003DMT400016142 | Potato | endoplasmic reticulum, golgi, peroxisome | 45.42 | 46.72 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 38.25 | 41.74 |
| Os01t0139000-00 | Rice | plasma membrane | 33.07 | 38.97 |
| Os03t0781700-01 | Rice | cytosol, peroxisome, plasma membrane | 37.05 | 37.65 |
| Os07t0142000-01 | Rice | plasma membrane | 35.86 | 36.59 |
| Os06t0503400-01 | Rice | plasma membrane | 37.85 | 35.85 |
| Os01t0851300-01 | Rice | golgi, plasma membrane, vacuole | 28.69 | 35.47 |
| Os04t0670000-01 | Rice | plasma membrane | 27.89 | 35.18 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 31.47 | 34.2 |
| KRH30696 | Soybean | plasma membrane | 31.08 | 31.71 |
| Os04t0367400-02 | Rice | plasma membrane | 25.9 | 30.52 |
| Os03t0336600-02 | Rice | plasma membrane | 24.3 | 26.41 |
Protein Annotations
| MapMan:13.7.2.1 | EntrezGene:4338381 | EMBL:AK069307 | ProteinID:BAF17078.1 | ProteinID:BAS93300.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | EnsemblPlantsGene:Os05g0312500 |
| EnsemblPlants:Os05t0312500-01 | PFAM:PF02453 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF94 | UniProt:Q0DJ95 |
| InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI0000E12437 | RefSeq:XP_015638805.1 | SEG:seg | : |
Description
Reticulon family protein. (Os05t0312500-01)
Coordinates
chr5:-:14356082..14359461
Molecular Weight (calculated)
28346.7 Da
IEP (calculated)
9.084
GRAVY (calculated)
-0.022
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSEGEEHGS LLEKINDKIH EFKKGSSSSS SSDSDDDKKH HHKSKSKKKR LFGRTNPLHH VLGGGKAADL VLWRDKQTSG SILAGVTVIW LLFEGIGYHL
101: LTFFCHSLMV FLTVCFVWAN AASFINRGPP KFPDAILSEV QCLKIAHILR KEINEAFLTL RHVASGKDLK TYLMTVAGLW FVSIIGSCFS FLTLSYTIFL
201: MAYTLPMLYE KYEDEVDVVG EKALIELKKQ YAVLDHKLLS KIPMLAEKKQ H
101: LTFFCHSLMV FLTVCFVWAN AASFINRGPP KFPDAILSEV QCLKIAHILR KEINEAFLTL RHVASGKDLK TYLMTVAGLW FVSIIGSCFS FLTLSYTIFL
201: MAYTLPMLYE KYEDEVDVVG EKALIELKKQ YAVLDHKLLS KIPMLAEKKQ H
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.