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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • mitochondrion 1
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0196500-01
Os01t0226300-01
Os01t0331900-01
Os01t0604700-01
Os01t0641700-01
Os01t0736900-01
Os01t0921600-01
Os02t0117400-01
Os02t0265900-01
Os02t0565200-01
Os03t0358200-00
Os03t0819900-01
Os04t0103300-01
Os04t0105300-01
Os04t0165400-01
Os04t0446300-01
Os05t0159100-01
Os05t0200280-01
Os05t0436400-03
Os05t0461300-01
Os05t0486200-01
Os05t0526400-01
Os05t0589000-02
Os06t0503400-01
Os06t0620600-01
Os07t0239400-01
Os07t0655400-01
Os10t0518200-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 Os01t0331900-01 AT1G09330.1 21798944
AT4G11220.1 Os05t0159100-01 AT1G09330.1 21798944
AT4G11220.1 Os04t0165400-01 AT3G59500.1 21798944
AT4G11220.1 Os06t0620600-01 AT3G59500.1 21798944
AT5G41600.1 Os01t0196500-01 AT1G55190.1 21798944
AT5G41600.1 Os05t0200280-01 AT1G55190.1 21798944
AT5G41600.1 Os05t0486200-01 AT1G77350.1 21798944
AT5G41600.1 Os02t0117400-01 AT2G03120.1 21798944
AT5G41600.1 Os05t0436400-03 AT2G03120.1 21798944
AT5G41600.1 Os02t0565200-01 AT2G39960.1 21798944
AT5G41600.1 Os04t0446300-01 AT2G39960.1 21798944
AT5G41600.1 Os04t0105300-01 AT2G46890.1 21798944
AT5G41600.1 Os01t0604700-01 AT3G02420.1 21798944
AT5G41600.1 Os01t0641700-01 AT3G02420.1 21798944
AT5G41600.1 Os05t0589000-02 AT3G02420.1 21798944
AT5G41600.1 Os03t0358200-00 AT3G07950.1 21798944
AT5G41600.1 Os04t0103300-01 AT3G07950.1 21798944
AT5G41600.1 Os07t0655400-01 AT3G07950.1 21798944
AT5G41600.1 Os01t0921600-01 AT3G27080.1 21798944
AT5G41600.1 Os03t0819900-01 AT3G46060.1 21798944
AT5G41600.1 Os05t0461300-01 AT3G46060.1 21798944
AT5G41600.1 Os07t0239400-01 AT3G46060.1 21798944
AT5G41600.1 Os04t0165400-01 AT3G59500.1 21798944
AT5G41600.1 Os06t0620600-01 AT3G59500.1 21798944
AT5G41600.1 Os01t0226300-01 AT5G41600.1 21798944
AT5G41600.1 Os01t0736900-01 AT5G41600.1 21798944
AT5G41600.1 Os02t0265900-01 AT5G41600.1 21798944
AT5G41600.1 Os05t0526400-01 AT5G41600.1 21798944
AT5G41600.1 Os06t0503400-01 AT5G41600.1 21798944
AT5G41600.1 Os10t0518200-01 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d016041_P001 Maize extracellular 75.22 75.22
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 74.78 74.14
Os06t0503400-01 Rice plasma membrane 76.52 66.42
Os01t0226300-01 Rice plasma membrane 45.65 58.99
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 56.52 51.59
Os05t0526400-01 Rice plasma membrane 56.09 51.39
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 56.09 51.19
Solyc01g095200.2.1 Tomato plastid 58.26 50.95
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 58.26 50.57
KRH41254 Soybean cytosol, nucleus, plasma membrane 55.65 50.39
CDY13240 Canola cytosol, peroxisome, plasma membrane 35.22 50.31
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 55.65 50.2
Os01t0736900-01 Rice plasma membrane 54.78 49.8
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 53.48 49.2
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 54.35 49.02
KRH59988 Soybean mitochondrion 53.91 48.82
Solyc03g007740.2.1 Tomato nucleus 53.91 48.63
KRG99174 Soybean endoplasmic reticulum, plasma membrane 18.26 48.28
KRH40357 Soybean endoplasmic reticulum 53.91 48.25
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 53.04 48.22
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 56.52 48.15
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 53.04 47.84
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 52.61 47.83
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 52.17 47.81
CDX79993 Canola cytosol, peroxisome, plasma membrane 52.17 47.81
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 56.09 47.78
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 52.17 47.24
CDY53913 Canola cytosol, peroxisome, plasma membrane 52.17 47.24
CDY52012 Canola cytosol, peroxisome, plasma membrane 52.17 47.24
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 53.91 47.15
KRH00872 Soybean endoplasmic reticulum 53.04 47.1
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 51.3 47.01
CDY42012 Canola cytosol, peroxisome, plasma membrane 51.3 47.01
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 51.3 47.01
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 51.3 47.01
CDY38194 Canola cytosol, nucleus, plasma membrane 50.87 46.8
CDX90792 Canola cytosol, peroxisome, plasma membrane 53.91 46.44
Bra000739.1-P Field mustard cytosol 53.91 46.44
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 50.43 46.4
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 50.0 46.0
KRH06560 Soybean endoplasmic reticulum 50.87 45.7
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 50.43 45.49
CDY57657 Canola cytosol, nucleus, plasma membrane 54.35 45.45
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 50.0 45.45
AT4G11220.1 Thale cress nucleus 53.48 45.39
Bra013717.1-P Field mustard nucleus 53.48 44.57
Bra010539.1-P Field mustard cytosol 51.74 44.24
CDY44123 Canola cytosol, nucleus, plasma membrane 53.04 44.2
Bra019285.1-P Field mustard cytosol 51.3 44.03
AT4G23630.2 Thale cress nucleus 52.61 44.0
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 49.13 43.97
CDY24806 Canola cytosol 52.17 43.8
CDY10954 Canola cytosol 51.3 43.7
CDY41666 Canola cytosol 51.3 42.75
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 46.52 42.13
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 49.13 41.7
KRH35223 Soybean cytosol, nucleus, plasma membrane 44.78 41.2
VIT_02s0025g00590.t01 Wine grape mitochondrion 10.43 40.0
CDY05135 Canola mitochondrion 53.04 38.98
KRH48008 Soybean cytosol, peroxisome, plasma membrane 53.04 38.85
Os03t0781700-01 Rice cytosol, peroxisome, plasma membrane 41.3 38.46
Os05t0312500-01 Rice plasma membrane 41.74 38.25
Os07t0142000-01 Rice plasma membrane 40.87 38.21
Os04t0670000-01 Rice plasma membrane 32.61 37.69
Os01t0139000-00 Rice plasma membrane 34.35 37.09
CDY48510 Canola cytosol 37.83 35.8
CDY07184 Canola cytosol, peroxisome, plasma membrane 37.83 35.8
Bra037369.1-P Field mustard cytosol 37.83 35.8
Os03t0336600-02 Rice plasma membrane 35.22 35.06
Os01t0691400-00 Rice cytosol, peroxisome 35.22 35.06
AT4G01230.2 Thale cress cytosol 36.52 34.43
CDY62522 Canola cytosol 11.74 33.75
Bra035242.1-P Field mustard cytosol 28.7 33.0
Os04t0367400-02 Rice plasma membrane 30.43 32.86
Os01t0851300-01 Rice golgi, plasma membrane, vacuole 28.26 32.02
CDX86802 Canola cytosol, nucleus, peroxisome 33.48 31.43
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 23.91 30.56
CDX89122 Canola extracellular, mitochondrion 20.0 30.07
KRG91601 Soybean mitochondrion 44.35 30.0
Protein Annotations
MapMan:13.7.2.1EntrezGene:4328956EMBL:AK059921EMBL:AK104196ProteinID:BAD27895.1ProteinID:BAF08415.1
ProteinID:BAS78013.1ProteinID:BAS78015.1ProteinID:EAZ22509.1GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388
EnsemblPlantsGene:Os02g0265900EnsemblPlants:Os02t0265900-01PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF87
UniProt:Q6ETX5InterPro:ReticulonTMHMM:TMhelixUniParc:UPI00003CE541RefSeq:XP_015622826.1:
Description
Reticulon family protein. (Os02t0265900-01);Hypothetical conserved gene. (Os02t0265900-02);Reticulon family protein. (Os02t0265900-03);Similar to Reticulon. (Os02t0265900-04)
Coordinates
chr2:+:9497687..9500218
Molecular Weight (calculated)
25148.0 Da
IEP (calculated)
8.958
GRAVY (calculated)
0.341
Length
230 amino acids
Sequence
(BLAST)
001: MAEPAGEAAP QADGVSEEAA ARPRGFRLLG GDKSVHQALG GGKAADVLLW KDKKISAAVI GGATVLWVLF EVVDYHFLTL ISHVLIGVLA ILFLWSKATI
101: FIKKSPPNIP EVKISEDLAV NVALALRTDI NQALHLLREI SLGHDLMKFL GVIVALWILS EIGSLCDFLT LFYVAVLMLH TVPILYHKYQ DKVDHFAGKA
201: HVELSRQYSV LDAKVLSKIP RGPAKDKKQN
Best Arabidopsis Sequence Match ( AT4G11220.1 )
(BLAST)
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Arabidopsis Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.