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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plasma membrane 2
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
WoLF PSORT:cytosol
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra013717.1-P Field mustard nucleus 93.45 93.12
CDY10954 Canola cytosol 91.27 92.96
CDY44123 Canola cytosol, nucleus, plasma membrane 93.09 92.75
CDY57657 Canola cytosol, nucleus, plasma membrane 92.73 92.73
Bra019285.1-P Field mustard cytosol 90.18 92.54
CDY24806 Canola cytosol 91.27 91.61
Bra010539.1-P Field mustard cytosol 89.45 91.45
CDY41666 Canola cytosol 89.82 89.49
AT4G11220.1 Thale cress nucleus 85.09 86.35
KRH59988 Soybean mitochondrion 64.73 70.08
KRH41254 Soybean cytosol, nucleus, plasma membrane 64.73 70.08
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 64.73 69.8
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 65.09 69.65
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 63.27 69.05
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 61.45 67.33
Os05t0526400-01 Rice plasma membrane 61.45 67.33
Zm00001d012776_P001 Maize extracellular 61.45 66.8
Zm00001d043551_P003 Maize plasma membrane 62.18 66.54
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 60.0 66.53
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 61.09 66.4
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 60.0 66.27
TraesCS3A01G278800.1 Wheat golgi 59.64 66.13
KXG33320 Sorghum cytosol, nucleus, plasma membrane 61.82 65.89
EES19841 Sorghum cytosol, nucleus, plasma membrane 61.09 65.88
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 61.09 65.88
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 60.0 65.74
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 59.27 65.73
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 64.36 65.56
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 64.36 65.56
Os01t0736900-01 Rice plasma membrane 60.0 65.22
Os01t0226300-01 Rice plasma membrane 41.82 64.61
Zm00001d038768_P001 Maize extracellular, mitochondrion 59.64 64.57
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 59.64 64.31
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 58.91 64.29
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 62.55 63.47
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 58.55 62.4
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 57.09 62.06
GSMUA_Achr3P31920_001 Banana cytosol 47.64 59.82
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 54.55 59.52
GSMUA_Achr4P08400_001 Banana cytosol 54.55 59.29
CDY62522 Canola cytosol 17.09 58.75
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 58.18 55.94
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 50.55 55.6
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 57.82 55.59
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 56.0 55.2
KXG31516 Sorghum cytosol, nucleus, plasma membrane 56.36 54.58
Zm00001d020229_P001 Maize plasma membrane 29.82 53.95
TraesCS1A01G346800.3 Wheat plasma membrane 49.09 53.57
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 44.0 52.61
Zm00001d016041_P001 Maize extracellular 43.27 51.74
Zm00001d020729_P001 Maize plasma membrane 17.82 51.58
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 48.73 51.34
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 42.91 50.86
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 56.0 50.33
HORVU3Hr1G030760.2 Barley mitochondrion 57.09 50.0
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 46.55 49.23
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 46.55 49.23
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 57.45 49.07
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 46.18 48.85
AT4G01230.2 Thale cress cytosol 43.27 48.77
EER89811 Sorghum peroxisome 45.09 48.44
Os06t0503400-01 Rice plasma membrane 45.82 47.55
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 45.09 47.51
HORVU7Hr1G081290.4 Barley plastid 37.45 44.59
HORVU7Hr1G075700.2 Barley mitochondrion 46.55 42.67
GSMUA_Achr3P15760_001 Banana cytosol 22.55 41.33
AT3G18260.1 Thale cress plasma membrane 31.64 38.67
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 24.0 36.67
AT3G10260.3 Thale cress plasma membrane 33.45 34.46
AT1G68230.2 Thale cress plasma membrane 26.18 33.49
AT3G54120.1 Thale cress cytosol, plasma membrane, vacuole 23.27 31.53
AT2G15280.1 Thale cress plasma membrane 22.91 31.34
AT3G19460.3 Thale cress plasma membrane 24.0 28.21
AT3G10915.7 Thale cress plasma membrane 24.0 26.29
AT2G23640.1 Thale cress cytosol, peroxisome, plasma membrane 16.36 21.84
Protein Annotations
MapMan:13.7.2.1EntrezGene:828463UniProt:A0A178V247ProteinID:AEE84787.1ProteinID:ANM66145.1ArrayExpress:AT4G23630
EnsemblPlantsGene:AT4G23630RefSeq:AT4G23630TAIR:AT4G23630RefSeq:AT4G23630-TAIR-GEnsemblPlants:AT4G23630.2EMBL:AY050321
EMBL:AY087881EMBL:AY133635Unigene:At.25485Symbol:BTI1ProteinID:CAA23029.1ProteinID:CAB79318.1
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005783
GO:GO:0005789GO:GO:0005886GO:GO:0008150GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016043GO:GO:0071458GO:GO:0071782GO:GO:0071786InterPro:IPR003388RefSeq:NP_001328059.1
RefSeq:NP_194094.1ProteinID:OAO98991.1PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF70
UniProt:Q9SUR3InterPro:ReticulonTMHMM:TMhelixUniParc:UPI00000A822FSEG:seg:
Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
Coordinates
chr4:+:12317173..12320074
Molecular Weight (calculated)
30530.5 Da
IEP (calculated)
8.628
GRAVY (calculated)
-0.068
Length
275 amino acids
Sequence
(BLAST)
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.