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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • cytosol 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY46067 Canola plasma membrane 75.73 75.0
Bra039207.1-P Field mustard plasma membrane 75.73 75.0
CDX76854 Canola plasma membrane 74.27 73.91
VIT_00s0253g00030.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 43.2 41.59
KRH76938 Soybean endoplasmic reticulum, plasma membrane 28.64 36.65
KRH28521 Soybean endoplasmic reticulum 36.89 35.85
PGSC0003DMT400026113 Potato plasma membrane, plastid 36.41 30.74
Solyc02g090370.2.1 Tomato plasma membrane 27.67 30.48
AT2G15280.1 Thale cress plasma membrane 24.76 25.37
AT3G18260.1 Thale cress plasma membrane 23.79 21.78
AT3G54120.1 Thale cress cytosol, plasma membrane, vacuole 20.87 21.18
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 25.24 20.55
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 25.24 20.39
AT1G68230.2 Thale cress plasma membrane 20.87 20.0
AT3G19460.3 Thale cress plasma membrane 22.33 19.66
AT4G01230.2 Thale cress cytosol 22.82 19.26
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 23.79 18.08
AT3G10915.7 Thale cress plasma membrane 21.36 17.53
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 21.84 17.51
AT3G10260.3 Thale cress plasma membrane 22.33 17.23
AT4G23630.2 Thale cress nucleus 21.84 16.36
AT4G11220.1 Thale cress nucleus 20.87 15.87
Protein Annotations
MapMan:13.7.2.1EntrezGene:816896ProteinID:AAC17096.1ProteinID:AAM14868.1ProteinID:AEC07475.1ArrayExpress:AT2G23640
EnsemblPlantsGene:AT2G23640RefSeq:AT2G23640TAIR:AT2G23640RefSeq:AT2G23640-TAIR-GEnsemblPlants:AT2G23640.1TAIR:AT2G23640.1
Unigene:At.50091EMBL:BX822075GO:GO:0003674GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0008150GO:GO:0009987GO:GO:0016020
GO:GO:0016021GO:GO:0016043GO:GO:0071458GO:GO:0071782GO:GO:0071786InterPro:IPR003388
RefSeq:NP_565555.1UniProt:O64837PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF86
Symbol:RTNLB13InterPro:ReticulonTMHMM:TMhelixUniParc:UPI00000A5CF1::
Description
RTNLB13Reticulon-like protein B13 [Source:UniProtKB/Swiss-Prot;Acc:O64837]
Coordinates
chr2:+:10057542..10059108
Molecular Weight (calculated)
23772.2 Da
IEP (calculated)
7.625
GRAVY (calculated)
0.093
Length
206 amino acids
Sequence
(BLAST)
001: MANDVTKDPT PKSDIVEDIY LWRRKKLAFS TLLVSTSTWI LLSFYGFTTI TIVSWIGIAV VSMIFLWGSL LRLLSKVEPE LSGLEVSEEF VVETVRSCRM
101: LMEEMVRWMF RVGAESEWFV FARTVLGFWI LSRIGNLLDF HTCLFIGLVM GLTVPKLWEE YGDQIQKHLG SLKDKSKGAY NTTHEKILEM KNKLHHGTEE
201: KVKKSE
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.