Factsheet for AT2G46170.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79993	Canola	cytosol, peroxisome, plasma membrane	88.63	90.04
Bra004562.1-P	Field mustard	cytosol, peroxisome, plasma membrane	88.63	90.04
CDY42012	Canola	cytosol, peroxisome, plasma membrane	87.84	89.24
AT3G61560.1	Thale cress	cytosol, nucleus, plasma membrane	81.96	82.61
PGSC0003DMT400049928	Potato	cytosol, nucleus, plasma membrane	64.71	64.71
KRH40357	Soybean	endoplasmic reticulum	65.1	64.59
PGSC0003DMT400000230	Potato	cytosol, nucleus, plasma membrane	66.27	63.77
KRH00872	Soybean	endoplasmic reticulum	64.71	63.71
Solyc10g011870.2.1	Tomato	cytosol, nucleus, plasma membrane	65.1	63.12
Solyc01g095200.2.1	Tomato	plastid	65.1	63.12
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	63.14	62.4
KRH06560	Soybean	endoplasmic reticulum	62.35	62.11
GSMUA_Achr8P27830_001	Banana	cytosol, peroxisome, plasma membrane	60.78	61.75
TraesCS1D01G349700.1	Wheat	cytosol, nucleus, plasma membrane	59.61	61.29
TraesCS1B01G360800.1	Wheat	cytosol, nucleus, plasma membrane	59.61	61.04
KRG99174	Soybean	endoplasmic reticulum, plasma membrane	20.78	60.92
EES19841	Sorghum	cytosol, nucleus, plasma membrane	60.78	60.78
Os05t0526400-01	Rice	plasma membrane	59.61	60.56
Zm00001d043551_P003	Maize	plasma membrane	60.78	60.31
GSMUA_Achr9P05440_001	Banana	nucleus, peroxisome, plasma membrane	59.22	60.16
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, plasma membrane	59.22	59.92
KXG33320	Sorghum	cytosol, nucleus, plasma membrane	60.39	59.69
TraesCS3D01G279100.1	Wheat	cytosol, nucleus, plasma membrane	58.04	59.68
AT4G23630.2	Thale cress	nucleus	64.31	59.64
Zm00001d038768_P001	Maize	extracellular, mitochondrion	59.22	59.45
Zm00001d012776_P001	Maize	extracellular	58.82	59.29
Os01t0736900-01	Rice	plasma membrane	58.82	59.29
TraesCS3A01G278800.1	Wheat	golgi	57.65	59.27
GSMUA_Achr6P31860_001	Banana	cytosol, nucleus, plasma membrane	58.43	59.13
TraesCS3B01G313000.1	Wheat	cytosol, nucleus, plasma membrane	58.04	58.5
AT5G41600.1	Thale cress	cytosol, nucleus, plasma membrane	58.82	58.37
Os01t0226300-01	Rice	plasma membrane	40.39	57.87
HORVU3Hr1G069970.2	Barley	cytosol, nucleus, plasma membrane	57.65	57.65
GSMUA_Achr5P06850_001	Banana	cytosol, nucleus, plasma membrane	56.08	57.2
GSMUA_Achr4P08400_001	Banana	cytosol	56.47	56.92
AT4G11220.1	Thale cress	nucleus	60.0	56.46
GSMUA_Achr3P31920_001	Banana	cytosol	48.24	56.16
AT4G01230.2	Thale cress	cytosol	53.73	56.15
AT1G64090.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	59.22	55.72
Zm00001d020229_P001	Maize	plasma membrane	31.76	53.29
Zm00001d020729_P001	Maize	plasma membrane	19.61	52.63
KRH48008	Soybean	cytosol, peroxisome, plasma membrane	64.31	52.23
Zm00001d008982_P001	Maize	cytosol, nucleus, plasma membrane	56.86	51.97
Zm00001d016041_P001	Maize	extracellular	46.67	51.74
TraesCS1A01G346800.3	Wheat	plasma membrane	50.59	51.19
KXG31516	Sorghum	cytosol, nucleus, plasma membrane	56.86	51.06
Os02t0265900-01	Rice	cytosol, peroxisome, plasma membrane	45.49	50.43
TraesCS3D01G159100.1	Wheat	cytosol, nucleus, plasma membrane	56.47	50.35
TraesCS3B01G178100.1	Wheat	cytosol, nucleus, plasma membrane	56.47	50.35
OQU84758	Sorghum	cytosol, peroxisome, plasma membrane	45.49	50.0
VIT_02s0025g00590.t01	Wine grape	mitochondrion	11.76	50.0
HORVU1Hr1G082010.3	Barley	cytosol, nucleus, plasma membrane, plastid	49.41	48.28
Zm00001d039316_P001	Maize	cytosol, nucleus, plasma membrane	57.65	48.04
EER89811	Sorghum	peroxisome	45.49	45.31
HORVU3Hr1G030760.2	Barley	mitochondrion	55.69	45.22
Zm00001d037453_P001	Maize	cytosol, peroxisome, plasma membrane	46.27	45.21
TraesCS3A01G151200.1	Wheat	cytosol, peroxisome, plasma membrane	56.47	44.72
TraesCS7D01G337800.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	45.49	44.62
Os06t0503400-01	Rice	plasma membrane	46.27	44.53
TraesCS7A01G341800.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	44.71	43.85
TraesCS7B01G241100.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	44.71	43.85
GSMUA_Achr3P15760_001	Banana	cytosol	24.31	41.33
HORVU7Hr1G081290.4	Barley	plastid	35.29	38.96
HORVU7Hr1G075700.2	Barley	mitochondrion	44.71	38.0
AT3G18260.1	Thale cress	plasma membrane	32.94	37.33
AT1G68230.2	Thale cress	plasma membrane	31.37	37.21
AT3G10260.3	Thale cress	plasma membrane	36.86	35.21
AT2G15280.1	Thale cress	plasma membrane	26.27	33.33
AT3G54120.1	Thale cress	cytosol, plasma membrane, vacuole	24.31	30.54
AT3G19460.3	Thale cress	plasma membrane	26.27	28.63
AT3G10915.7	Thale cress	plasma membrane	25.49	25.9
AT2G23640.1	Thale cress	cytosol, peroxisome, plasma membrane	20.39	25.24

Protein Annotations

MapMan:13.7.2.1	EntrezGene:819224	ProteinID:AAC62889.1	ProteinID:AEC10651.1	ArrayExpress:AT2G46170	EnsemblPlantsGene:AT2G46170
RefSeq:AT2G46170	TAIR:AT2G46170	RefSeq:AT2G46170-TAIR-G	EnsemblPlants:AT2G46170.1	TAIR:AT2G46170.1	EMBL:AY053421
EMBL:AY074836	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0005886	GO:GO:0008150	GO:GO:0009628	GO:GO:0016020	GO:GO:0016021
GO:GO:0080167	InterPro:IPR003388	RefSeq:NP_566065.1	UniProt:O82352	PFAM:PF02453	PO:PO:0000005
PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016
PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0005052	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50845
PANTHER:PTHR10994	PANTHER:PTHR10994:SF95	InterPro:Reticulon	TMHMM:TMhelix	UniParc:UPI00000A0AB3	SEG:seg

Description

RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]

Coordinates

chr2:+:18965068..18967271

Molecular Weight (calculated)

28689.3 Da

IEP (calculated)

7.781

GRAVY (calculated)

0.164

Length

255 amino acids

Sequence
(BLAST)

001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.