Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000739.1-P | Field mustard | cytosol | 91.14 | 92.51 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 90.77 | 92.13 |
| AT4G23630.2 | Thale cress | nucleus | 86.35 | 85.09 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 47.23 | 79.5 |
| CDY05135 | Canola | mitochondrion | 87.82 | 76.04 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 66.42 | 70.87 |
| KRH59988 | Soybean | mitochondrion | 66.05 | 70.47 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 63.84 | 68.65 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 64.94 | 68.48 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 60.52 | 65.34 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 60.52 | 64.31 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 63.84 | 64.07 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 63.84 | 64.07 |
| Os01t0226300-01 | Rice | plasma membrane | 42.07 | 64.04 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 58.3 | 62.95 |
| Os01t0736900-01 | Rice | plasma membrane | 58.3 | 62.45 |
| Zm00001d012776_P001 | Maize | extracellular | 58.3 | 62.45 |
| Zm00001d043551_P003 | Maize | plasma membrane | 59.04 | 62.26 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 59.04 | 62.02 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 61.25 | 61.25 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 56.83 | 61.11 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 56.09 | 61.04 |
| Os05t0526400-01 | Rice | plasma membrane | 56.46 | 60.96 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 56.83 | 60.87 |
| TraesCS3A01G278800.1 | Wheat | golgi | 55.35 | 60.48 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 55.35 | 60.48 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 56.83 | 60.39 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 56.83 | 60.39 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 54.98 | 60.08 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 57.2 | 60.08 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 56.46 | 60.0 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 55.35 | 59.06 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 54.61 | 58.73 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 54.61 | 58.5 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 47.23 | 58.45 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 53.87 | 57.71 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 56.09 | 54.48 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 49.82 | 54.0 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 56.46 | 53.87 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 56.83 | 53.85 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 56.46 | 53.5 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 45.39 | 53.48 |
| Zm00001d016041_P001 | Maize | extracellular | 45.02 | 53.04 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 44.28 | 51.72 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 47.6 | 49.62 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 47.6 | 49.62 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 55.72 | 49.35 |
| Zm00001d020229_P001 | Maize | plasma membrane | 27.68 | 49.34 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 47.23 | 49.23 |
| EER89811 | Sorghum | peroxisome | 46.49 | 49.22 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 45.76 | 49.21 |
| Os06t0503400-01 | Rice | plasma membrane | 47.6 | 48.68 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 46.49 | 48.28 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 55.72 | 48.09 |
| AT4G01230.2 | Thale cress | cytosol | 42.8 | 47.54 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 45.76 | 47.51 |
| Zm00001d020729_P001 | Maize | plasma membrane | 16.61 | 47.37 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 56.09 | 47.2 |
| Bra035242.1-P | Field mustard | cytosol | 34.69 | 47.0 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 42.07 | 46.53 |
| HORVU7Hr1G081290.4 | Barley | plastid | 38.38 | 45.02 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 47.6 | 43.0 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 21.77 | 39.33 |
| AT3G18260.1 | Thale cress | plasma membrane | 31.0 | 37.33 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 23.62 | 35.56 |
| AT1G68230.2 | Thale cress | plasma membrane | 27.31 | 34.42 |
| AT3G10260.3 | Thale cress | plasma membrane | 31.73 | 32.21 |
| AT3G54120.1 | Thale cress | cytosol, plasma membrane, vacuole | 23.25 | 31.03 |
| AT2G15280.1 | Thale cress | plasma membrane | 21.77 | 29.35 |
| AT3G19460.3 | Thale cress | plasma membrane | 22.88 | 26.5 |
| AT3G10915.7 | Thale cress | plasma membrane | 23.99 | 25.9 |
| AT2G23640.1 | Thale cress | cytosol, peroxisome, plasma membrane | 15.87 | 20.87 |
Protein Annotations
| MapMan:13.7.2.1 | EntrezGene:826724 | UniProt:A0A178V3N3 | ProteinID:AEE82986.1 | ArrayExpress:AT4G11220 | EnsemblPlantsGene:AT4G11220 |
| RefSeq:AT4G11220 | TAIR:AT4G11220 | RefSeq:AT4G11220-TAIR-G | EnsemblPlants:AT4G11220.1 | TAIR:AT4G11220.1 | EMBL:AY034901 |
| EMBL:AY048273 | EMBL:AY057606 | EMBL:AY086294 | EMBL:BT002368 | Symbol:BTI2 | ProteinID:CAB51406.1 |
| ProteinID:CAB81223.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0071458 | GO:GO:0071782 | GO:GO:0071786 | InterPro:IPR003388 |
| RefSeq:NP_192861.1 | ProteinID:OAP00849.1 | PFAM:PF02453 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 |
| UniProt:Q9SUT9 | InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI00000AC51D | SEG:seg | : |
Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
Coordinates
chr4:-:6837911..6840036
Molecular Weight (calculated)
30281.9 Da
IEP (calculated)
8.930
GRAVY (calculated)
-0.144
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.