Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 81.99 | 49.44 |
| AT4G11220.1 | Thale cress | nucleus | 79.5 | 47.23 |
| Os01t0226300-01 | Rice | plasma membrane | 49.69 | 44.94 |
| CDY10954 | Canola | cytosol | 70.81 | 42.22 |
| CDY05135 | Canola | mitochondrion | 81.37 | 41.85 |
| CDY24806 | Canola | cytosol | 70.19 | 41.24 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 70.19 | 41.09 |
| CDY41666 | Canola | cytosol | 70.19 | 40.94 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 69.57 | 40.58 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 60.25 | 39.59 |
| Bra035242.1-P | Field mustard | cytosol | 48.45 | 39.0 |
| KRH59988 | Soybean | mitochondrion | 60.87 | 38.58 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 60.25 | 38.19 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 58.39 | 37.45 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 57.76 | 37.05 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 57.76 | 36.47 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 55.9 | 35.71 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 55.28 | 35.32 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 50.31 | 35.22 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 47.83 | 35.16 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 54.66 | 35.06 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 54.66 | 35.06 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 55.9 | 34.88 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 58.39 | 34.81 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 58.39 | 34.81 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 54.66 | 34.51 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 54.66 | 34.51 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 53.42 | 34.4 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 53.42 | 34.4 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 54.04 | 34.39 |
| Zm00001d012776_P001 | Maize | extracellular | 54.04 | 34.39 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 52.8 | 34.27 |
| TraesCS3A01G278800.1 | Wheat | golgi | 52.8 | 34.27 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 52.8 | 34.27 |
| Os05t0526400-01 | Rice | plasma membrane | 53.42 | 34.26 |
| Zm00001d043551_P003 | Maize | plasma membrane | 54.66 | 34.24 |
| Zm00001d020229_P001 | Maize | plasma membrane | 32.3 | 34.21 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 52.8 | 34.14 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 54.66 | 34.11 |
| Os01t0736900-01 | Rice | plasma membrane | 52.8 | 33.6 |
| Zm00001d016041_P001 | Maize | extracellular | 47.83 | 33.48 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 52.8 | 33.46 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 52.17 | 33.33 |
| EER89811 | Sorghum | peroxisome | 52.17 | 32.81 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 51.55 | 32.81 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 47.2 | 32.76 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 49.69 | 31.87 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 56.52 | 31.82 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 51.55 | 31.8 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 49.69 | 31.5 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 49.07 | 31.47 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 55.9 | 31.47 |
| Os06t0503400-01 | Rice | plasma membrane | 51.55 | 31.32 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 48.45 | 31.2 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 50.31 | 31.15 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 50.31 | 31.15 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 49.07 | 31.1 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 49.69 | 30.77 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 51.55 | 29.75 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 52.17 | 29.58 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 55.9 | 28.66 |
| Zm00001d020729_P001 | Maize | plasma membrane | 16.77 | 28.42 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 55.9 | 27.95 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 52.17 | 27.45 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 50.93 | 27.33 |
| HORVU7Hr1G081290.4 | Barley | plastid | 39.13 | 27.27 |
| CDX89122 | Canola | extracellular, mitochondrion | 24.84 | 26.14 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 29.81 | 25.81 |
| CDY62522 | Canola | cytosol | 12.42 | 25.0 |
| CDY00916 | Canola | plasma membrane | 36.02 | 24.27 |
| CDY08616 | Canola | plasma membrane | 36.02 | 24.27 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 36.02 | 23.87 |
| CDY48510 | Canola | cytosol | 36.02 | 23.87 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 36.65 | 23.41 |
| CDX96038 | Canola | plasma membrane | 30.43 | 23.22 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 21.12 | 22.67 |
| CDY01898 | Canola | plasma membrane | 29.19 | 22.17 |
| CDX81500 | Canola | plasma membrane | 28.57 | 22.12 |
| CDX75962 | Canola | plasma membrane | 30.43 | 21.88 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 30.43 | 21.88 |
| CDY67571 | Canola | plasma membrane | 30.43 | 21.88 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 34.78 | 21.46 |
| CDY46172 | Canola | plastid | 26.71 | 21.29 |
| CDX99221 | Canola | plasma membrane | 26.71 | 21.18 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 25.47 | 20.2 |
| CDY51584 | Canola | plasma membrane | 25.47 | 20.2 |
| CDX82294 | Canola | plastid | 24.22 | 19.9 |
| CDY22970 | Canola | plasma membrane | 23.6 | 19.39 |
| CDY22971 | Canola | plasma membrane | 23.6 | 19.39 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 29.19 | 18.95 |
| CDY46067 | Canola | plasma membrane | 24.22 | 18.75 |
| CDX71213 | Canola | plasma membrane | 23.6 | 18.72 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 23.6 | 18.72 |
| CDX76854 | Canola | plasma membrane | 23.6 | 18.36 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 26.09 | 17.57 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 22.36 | 17.56 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 22.36 | 17.56 |
| CDY36282 | Canola | plasma membrane | 23.6 | 17.04 |
| CDY08567 | Canola | cytosol | 25.47 | 17.01 |
| CDY12701 | Canola | plasma membrane | 29.81 | 15.89 |
| CDY56712 | Canola | mitochondrion | 34.16 | 15.49 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 14.91 | 13.33 |
Protein Annotations
| MapMan:13.7.2.1 | GO:A0A078FFR1 | UniProt:A0A078FFR1 | EnsemblPlants:CDY13240 | ProteinID:CDY13240 | ProteinID:CDY13240.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00071155001 | InterPro:IPR003388 | PFAM:PF02453 | PFscan:PS50845 |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI0004EE7630 | SEG:seg |
Description
BnaC09g24160DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFR1]
Coordinates
chrLK032033:-:41755..42772
Molecular Weight (calculated)
18357.9 Da
IEP (calculated)
9.053
GRAVY (calculated)
0.377
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MADERKHEEP LPNLDPTFTR FSAAENRLIY FMWKNKKVSG GATVSWVLFE LIEYHLLALL CHLMIVSLAA LFLWSYVTMF LSAILGLWIL SILGGCCSFL
101: TLAYIALVLL FTVPLIYDKY EDKVDSYGEK AMADLKKQYA VLDAKMLSKI PRGPLKNKKK V
101: TLAYIALVLL FTVPLIYDKY EDKVDSYGEK AMADLKKQYA VLDAKMLSKI PRGPLKNKKK V
001: MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
101: FGGATVAWVL FELMEYHLLT LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE IASGRDIKKF LSAIAGLWVL
201: SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D
Arabidopsis Description
RTNLB2Reticulon-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.