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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, extracellular

Predictor Summary:
  • plastid 2
  • extracellular 3
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, mitochondrion
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
MultiLoc:extracellular
Predotar:mitochondrion
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY13240 Canola cytosol, peroxisome, plasma membrane 26.14 24.84
CDY52012 Canola cytosol, peroxisome, plasma membrane 41.18 24.8
CDY53913 Canola cytosol, peroxisome, plasma membrane 41.18 24.8
Os01t0226300-01 Rice plasma membrane 28.76 24.72
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 40.52 24.51
CDX79993 Canola cytosol, peroxisome, plasma membrane 39.22 23.9
CDY42012 Canola cytosol, peroxisome, plasma membrane 38.56 23.51
Zm00001d020229_P001 Maize plasma membrane 21.57 21.71
Zm00001d016041_P001 Maize extracellular 32.03 21.3
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 35.29 21.18
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 34.64 21.03
KRH06560 Soybean endoplasmic reticulum 34.64 20.7
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 31.37 20.69
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 34.64 20.15
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 30.07 20.0
KRH40357 Soybean endoplasmic reticulum 33.33 19.84
Solyc01g095200.2.1 Tomato plastid 33.99 19.77
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 32.03 19.52
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 32.03 19.44
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 31.37 19.35
KRH00872 Soybean endoplasmic reticulum 32.68 19.3
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 31.37 19.28
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 33.33 19.25
EES19841 Sorghum cytosol, nucleus, plasma membrane 32.03 19.22
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 31.37 19.2
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 31.37 19.12
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 31.37 19.12
TraesCS3A01G278800.1 Wheat golgi 30.72 18.95
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 30.72 18.95
Zm00001d020729_P001 Maize plasma membrane 11.76 18.95
CDY66516 Canola endoplasmic reticulum, extracellular 22.88 18.82
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 30.72 18.8
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 30.72 18.73
Os05t0526400-01 Rice plasma membrane 30.72 18.73
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 31.37 18.6
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 30.72 18.58
Zm00001d012776_P001 Maize extracellular 30.72 18.58
Zm00001d038768_P001 Maize extracellular, mitochondrion 30.72 18.5
CDX96038 Canola plasma membrane 25.49 18.48
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 30.72 18.43
CDY38194 Canola cytosol, nucleus, plasma membrane 30.07 18.4
CDY01898 Canola plasma membrane 25.49 18.4
CDX90792 Canola cytosol, peroxisome, plasma membrane 32.03 18.35
Zm00001d043551_P003 Maize plasma membrane 30.72 18.29
CDX81500 Canola plasma membrane 24.84 18.27
KXG33320 Sorghum cytosol, nucleus, plasma membrane 30.72 18.22
Os01t0736900-01 Rice plasma membrane 30.07 18.18
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 30.72 18.01
EER89811 Sorghum peroxisome 30.07 17.97
CDY57657 Canola cytosol, nucleus, plasma membrane 32.03 17.82
CDY10954 Canola cytosol 31.37 17.78
CDY41666 Canola cytosol 32.03 17.75
CDY24806 Canola cytosol 31.37 17.52
CDY44123 Canola cytosol, nucleus, plasma membrane 31.37 17.39
GSMUA_Achr3P31920_001 Banana cytosol 24.84 17.35
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 29.41 17.31
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 29.41 17.31
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 29.41 17.31
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 31.37 17.2
KRH48008 Soybean cytosol, peroxisome, plasma membrane 35.29 17.2
GSMUA_Achr4P08400_001 Banana cytosol 28.1 17.0
Os06t0503400-01 Rice plasma membrane 29.41 16.98
CDY07184 Canola cytosol, peroxisome, plasma membrane 26.8 16.87
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 31.37 16.78
CDY48510 Canola cytosol 26.14 16.46
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 30.72 16.43
KXG31516 Sorghum cytosol, nucleus, plasma membrane 30.07 16.2
CDX75962 Canola plasma membrane 23.53 16.07
CDY67571 Canola plasma membrane 23.53 16.07
CDX86802 Canola cytosol, nucleus, peroxisome 25.49 15.92
CDY51936 Canola endoplasmic reticulum, peroxisome, plasma membrane 22.88 15.62
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 30.72 15.36
CDY05135 Canola mitochondrion 31.37 15.34
HORVU3Hr1G030760.2 Barley mitochondrion 31.37 15.29
CDX67589 Canola golgi, plasma membrane, vacuole 20.26 15.27
HORVU7Hr1G081290.4 Barley plastid 22.88 15.15
HORVU7Hr1G075700.2 Barley mitochondrion 29.41 15.0
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 31.37 14.91
CDY46172 Canola plastid 19.61 14.85
CDX82294 Canola plastid 18.95 14.8
CDX99221 Canola plasma membrane 19.61 14.78
CDY22970 Canola plasma membrane 18.3 14.29
CDY22971 Canola plasma membrane 18.3 14.29
CDY51584 Canola plasma membrane 18.95 14.29
CDY08616 Canola plasma membrane 22.22 14.23
CDY46067 Canola plasma membrane 18.95 13.94
CDY00916 Canola plasma membrane 21.57 13.81
CDX76854 Canola plasma membrane 18.3 13.53
CDX78209 Canola golgi, plasma membrane, vacuole 17.65 13.17
CDY36282 Canola plasma membrane 18.95 13.0
CDX71213 Canola plasma membrane 16.99 12.81
CDY48222 Canola cytosol, endoplasmic reticulum, plasma membrane 16.99 12.81
CDX73507 Canola cytosol, golgi, plasma membrane 16.99 12.68
KRG99174 Soybean endoplasmic reticulum, plasma membrane 7.19 12.64
CDY00975 Canola cytosol, endoplasmic reticulum, peroxisome 19.61 12.55
CDY12701 Canola plasma membrane 24.18 12.25
CDY08567 Canola cytosol 18.95 12.03
CDX82165 Canola endoplasmic reticulum, peroxisome, plasma membrane, plastid 18.95 11.69
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 15.69 9.2
TraesCS1A01G346800.3 Wheat plasma membrane 15.03 9.13
CDY56712 Canola mitochondrion 20.91 9.01
CDY62522 Canola cytosol 4.58 8.75
VIT_02s0025g00590.t01 Wine grape mitochondrion 2.61 6.67
GSMUA_Achr3P15760_001 Banana cytosol 5.88 6.0
Protein Annotations
EnsemblPlants:CDX89122EnsemblPlantsGene:GSBRNA2T00149263001InterPro:IPR003388InterPro:ReticulonPANTHER:PTHR10994PANTHER:PTHR10994:SF95
PFAM:PF02453PFscan:PS50845ProteinID:CDX89122ProteinID:CDX89122.1UniParc:UPI0004EE61C2MapMan:13.7.2.1
Description
BnaA04g00640D
Coordinates
chrLK031857:+:1154299..1154928
Molecular Weight (calculated)
17796.3 Da
IEP (calculated)
9.581
GRAVY (calculated)
0.125
Length
153 amino acids
Sequence
(BLAST)
001: MFSGLHLKFL KSILKTKFPF DCFCTEKRAE QGLCYLKEHC VRKGLEKNSD VIHILVINRF LVNNLYLFGQ YSLDFYSQVV VGLWIISVVG KLVQLLDRCF
101: VLLHTVPMMY EKHEDKVDPV AEKRMKELKK HYVVFDDKVL SKVPLASLKA KLG
Best Arabidopsis Sequence Match ( AT3G61560.1 )
(BLAST)
001: MAEELEKSMH KEESLMEKIA DKIHDHDSSS SSDSEHEKPE SPSALKAKIY RLFGREKPVH KVLGGGLPAD VFLWRDKKLS ASVLGVATAI WVLFELVEYH
101: FLSLVCHILI FALAALFLLS NAHAFMNKTP PKIPEIHIKE EHFLMIVSAL RNELNQAFVI LRSIALGRDL KKFLMVVFGL WIISVVGNWF NFLTLVYICF
201: VVLHTVPMLY EKHEDKVDPV AEKTLKELKK HYMVFDEKVL SKLPVASLKA KLG
Arabidopsis Description
RTNLB6Reticulon-like protein B6 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN4]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.