Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010539.1-P | Field mustard | cytosol | 93.12 | 95.54 |
| CDY24806 | Canola | cytosol | 94.2 | 94.89 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 91.3 | 91.3 |
| CDY10954 | Canola | cytosol | 88.77 | 90.74 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 90.22 | 90.55 |
| AT4G23630.2 | Thale cress | nucleus | 89.49 | 89.82 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 80.43 | 83.15 |
| KRH59988 | Soybean | mitochondrion | 65.58 | 71.26 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 64.86 | 70.47 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 40.94 | 70.19 |
| CDY05135 | Canola | mitochondrion | 79.35 | 69.97 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 63.41 | 69.72 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 63.04 | 69.6 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 62.68 | 69.2 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 62.68 | 68.92 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 62.32 | 68.25 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 62.68 | 67.84 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 59.78 | 66.53 |
| TraesCS3A01G278800.1 | Wheat | golgi | 59.06 | 65.73 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 60.14 | 65.61 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 59.42 | 65.34 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 60.14 | 65.1 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 58.7 | 64.54 |
| Os01t0736900-01 | Rice | plasma membrane | 59.06 | 64.43 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 58.33 | 64.14 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 58.33 | 64.14 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 62.68 | 64.07 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 62.68 | 64.07 |
| Os05t0526400-01 | Rice | plasma membrane | 57.97 | 63.74 |
| Zm00001d012776_P001 | Maize | extracellular | 58.33 | 63.64 |
| Zm00001d043551_P003 | Maize | plasma membrane | 59.06 | 63.42 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 58.7 | 62.79 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 57.97 | 62.75 |
| Os01t0226300-01 | Rice | plasma membrane | 40.22 | 62.36 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 56.88 | 62.3 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 56.16 | 62.25 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 57.25 | 62.2 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 55.8 | 62.1 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 56.52 | 61.42 |
| CDY62522 | Canola | cytosol | 17.75 | 61.25 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 57.25 | 61.24 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 55.8 | 60.63 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 53.99 | 59.13 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 46.01 | 57.99 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 52.54 | 57.31 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 55.43 | 54.84 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 55.8 | 54.23 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 48.19 | 53.2 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 55.07 | 53.15 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 54.71 | 52.8 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 42.75 | 51.3 |
| Zm00001d016041_P001 | Maize | extracellular | 42.39 | 50.87 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 46.38 | 50.79 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 42.03 | 50.0 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 55.43 | 50.0 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 46.74 | 49.43 |
| Zm00001d020229_P001 | Maize | plasma membrane | 27.17 | 49.34 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 45.65 | 48.46 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 45.65 | 48.46 |
| EER89811 | Sorghum | peroxisome | 44.93 | 48.44 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 54.71 | 48.09 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 45.29 | 48.08 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 44.93 | 47.51 |
| Zm00001d020729_P001 | Maize | plasma membrane | 16.3 | 47.37 |
| Os06t0503400-01 | Rice | plasma membrane | 44.93 | 46.79 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 54.35 | 46.58 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 40.94 | 46.5 |
| CDY48510 | Canola | cytosol | 40.94 | 46.5 |
| HORVU7Hr1G081290.4 | Barley | plastid | 37.68 | 45.02 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 39.86 | 44.9 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 45.65 | 42.0 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 21.74 | 40.0 |
| CDY00916 | Canola | plasma membrane | 32.25 | 37.24 |
| CDY08616 | Canola | plasma membrane | 31.52 | 36.4 |
| CDX75962 | Canola | plasma membrane | 29.35 | 36.16 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 29.35 | 36.16 |
| CDY46172 | Canola | plastid | 25.72 | 35.15 |
| CDX99221 | Canola | plasma membrane | 25.72 | 34.98 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 23.55 | 34.95 |
| CDY67571 | Canola | plasma membrane | 28.26 | 34.82 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 22.46 | 34.44 |
| CDX96038 | Canola | plasma membrane | 25.36 | 33.18 |
| CDX82294 | Canola | plastid | 23.55 | 33.16 |
| CDY22970 | Canola | plasma membrane | 23.55 | 33.16 |
| CDY22971 | Canola | plasma membrane | 23.55 | 33.16 |
| CDY01898 | Canola | plasma membrane | 25.36 | 33.02 |
| CDX81500 | Canola | plasma membrane | 24.28 | 32.21 |
| CDX89122 | Canola | extracellular, mitochondrion | 17.75 | 32.03 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 23.55 | 32.02 |
| CDY51584 | Canola | plasma membrane | 23.55 | 32.02 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 22.46 | 30.24 |
| CDX71213 | Canola | plasma membrane | 22.1 | 30.05 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 22.1 | 30.05 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 22.1 | 29.76 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 25.72 | 29.71 |
| CDY36282 | Canola | plasma membrane | 23.19 | 28.7 |
| CDY08567 | Canola | cytosol | 25.0 | 28.63 |
| CDY46067 | Canola | plasma membrane | 19.2 | 25.48 |
| CDY56712 | Canola | mitochondrion | 32.61 | 25.35 |
| CDX76854 | Canola | plasma membrane | 18.84 | 25.12 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 21.74 | 24.19 |
| CDY12701 | Canola | plasma membrane | 24.64 | 22.52 |
Protein Annotations
| MapMan:13.7.2.1 | GO:A0A078HVD0 | UniProt:A0A078HVD0 | EnsemblPlants:CDY41666 | ProteinID:CDY41666 | ProteinID:CDY41666.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00073340001 | InterPro:IPR003388 | PFAM:PF02453 | PFscan:PS50845 |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI0004EE602A | SEG:seg |
Description
BnaC03g62180DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVD0]
Coordinates
chrLK032502:+:268962..270585
Molecular Weight (calculated)
30907.8 Da
IEP (calculated)
8.871
GRAVY (calculated)
-0.172
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEDHKHEEP VTASEPGVEI VERESLMDKI SEKIHHGGDS SSSSSSSDEE DDKNDKKKEK PSSPSSMKSK VYRLFGREKP VHKVLGGGKP ADIFMWKDKK
101: MSGGVLGGAT AAWVLFELME YHLLTLLCHV MIVVLAVLFL WSNVTRFIHK SPPKIPQVHI PEEPVLQLAS GLRIEINRGF SSLREIASGR DLKKFISAIA
201: GLWVLSILGG WFNFLTLAYI ALVLLFTVPL VYDKYEDKVD PLGEKAMIEI KKQYAVLDEK VLSKIPLGPL KNKKRD
101: MSGGVLGGAT AAWVLFELME YHLLTLLCHV MIVVLAVLFL WSNVTRFIHK SPPKIPQVHI PEEPVLQLAS GLRIEINRGF SSLREIASGR DLKKFISAIA
201: GLWVLSILGG WFNFLTLAYI ALVLLFTVPL VYDKYEDKVD PLGEKAMIEI KKQYAVLDEK VLSKIPLGPL KNKKRD
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.