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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:peroxisome, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY66516 Canola endoplasmic reticulum, extracellular 80.8 97.31
CDX75962 Canola plasma membrane 87.05 87.05
CDY51936 Canola endoplasmic reticulum, peroxisome, plasma membrane 86.61 86.61
AT3G18260.1 Thale cress plasma membrane 85.71 85.33
PGSC0003DMT400014404 Potato cytosol, plasma membrane, vacuole 21.43 51.06
KRH48561 Soybean plasma membrane 50.45 50.9
Solyc03g119190.2.1 Tomato plasma membrane 48.66 49.77
KRH39144 Soybean plasma membrane 48.66 49.1
VIT_17s0000g03260.t01 Wine grape plasma membrane 45.98 48.58
GSMUA_Achr2P07230_001 Banana golgi, plasma membrane, vacuole 41.07 43.81
TraesCS3B01G294700.1 Wheat plasma membrane 41.96 42.92
TraesCS3A01G261500.1 Wheat plasma membrane 41.52 42.47
KXG33168 Sorghum golgi, peroxisome, plasma membrane 40.18 41.67
Os01t0691400-00 Rice cytosol, peroxisome 42.41 41.13
HORVU3Hr1G064240.2 Barley plasma membrane 40.18 41.1
Os01t0139000-00 Rice plasma membrane 38.84 40.85
EES19907 Sorghum cytosol, peroxisome, plasma membrane 41.07 40.71
GSMUA_Achr8P31770_001 Banana peroxisome 39.73 39.91
Zm00001d038910_P001 Maize plasma membrane 40.18 39.65
TraesCS1A01G373800.1 Wheat cytosol, peroxisome, plasma membrane 41.07 39.32
TraesCS1D01G380400.1 Wheat cytosol, peroxisome, plasma membrane 41.07 39.32
Zm00001d011631_P001 Maize golgi, peroxisome, plasma membrane 38.39 38.91
TraesCS1B01G393700.1 Wheat cytosol, peroxisome, plasma membrane 40.62 38.89
TraesCS3D01G050800.1 Wheat mitochondrion 38.84 37.18
EES02516 Sorghum peroxisome, plastid 35.71 36.7
TraesCS3B01G060400.1 Wheat mitochondrion 38.39 36.29
CDX96038 Canola plasma membrane 33.04 35.07
CDY01898 Canola plasma membrane 33.04 34.91
CDY08616 Canola plasma membrane 36.61 34.31
CDX81500 Canola plasma membrane 31.25 33.65
CDY00916 Canola plasma membrane 35.71 33.47
CDX79993 Canola cytosol, peroxisome, plasma membrane 37.5 33.47
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 37.5 33.47
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 37.5 33.47
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 37.05 33.2
CDY38194 Canola cytosol, nucleus, plasma membrane 37.05 33.2
CDY42012 Canola cytosol, peroxisome, plasma membrane 37.05 33.07
CDY53913 Canola cytosol, peroxisome, plasma membrane 36.61 32.28
CDY52012 Canola cytosol, peroxisome, plasma membrane 36.61 32.28
CDX90792 Canola cytosol, peroxisome, plasma membrane 37.5 31.46
CDY57657 Canola cytosol, nucleus, plasma membrane 37.5 30.55
CDY48510 Canola cytosol 33.04 30.45
CDY07184 Canola cytosol, peroxisome, plasma membrane 33.04 30.45
CDY13240 Canola cytosol, peroxisome, plasma membrane 21.88 30.43
CDX67589 Canola golgi, plasma membrane, vacuole 27.23 30.05
CDX73507 Canola cytosol, golgi, plasma membrane 27.23 29.76
CDX78209 Canola golgi, plasma membrane, vacuole 27.23 29.76
CDY36282 Canola plasma membrane 29.46 29.6
CDY44123 Canola cytosol, nucleus, plasma membrane 36.16 29.35
CDY10954 Canola cytosol 35.27 29.26
HORVU1Hr1G083110.3 Barley plastid 37.95 29.11
CDY51584 Canola plasma membrane 26.34 29.06
CDY24806 Canola cytosol 35.27 28.83
CDY46172 Canola plastid 25.89 28.71
CDY22971 Canola plasma membrane 25.0 28.57
CDY22970 Canola plasma membrane 25.0 28.57
CDX82294 Canola plastid 25.0 28.57
CDX99221 Canola plasma membrane 25.89 28.57
CDY00975 Canola cytosol, endoplasmic reticulum, peroxisome 30.36 28.45
CDY41666 Canola cytosol 34.82 28.26
CDY08567 Canola cytosol 30.36 28.22
Zm00001d008590_P001 Maize plastid 16.52 27.82
CDY62522 Canola cytosol 9.82 27.5
TraesCS3A01G051200.1 Wheat cytosol 39.29 26.67
CDX82165 Canola endoplasmic reticulum, peroxisome, plasma membrane, plastid 29.46 26.61
CDY05135 Canola mitochondrion 37.05 26.52
CDX71213 Canola plasma membrane 23.21 25.62
CDY48222 Canola cytosol, endoplasmic reticulum, plasma membrane 23.21 25.62
HORVU3Hr1G008400.1 Barley cytosol, peroxisome 38.84 25.0
CDX76854 Canola plasma membrane 22.77 24.64
CDY12701 Canola plasma membrane 32.59 24.17
CDY46067 Canola plasma membrane 21.88 23.56
CDX89122 Canola extracellular, mitochondrion 16.07 23.53
GSMUA_AchrUn_... Banana golgi 36.61 23.3
CDY56712 Canola mitochondrion 35.71 22.54
CDX86802 Canola cytosol, nucleus, peroxisome 23.21 21.22
Protein Annotations
EnsemblPlants:CDY67571EnsemblPlantsGene:GSBRNA2T00064468001GO:A0A078JPC2GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388
InterPro:ReticulonPANTHER:PTHR10994PANTHER:PTHR10994:SF85PFAM:PF02453PFscan:PS50845ProteinID:CDY67571
ProteinID:CDY67571.1TMHMM:TMhelixUniParc:UPI0004EE4278UniProt:A0A078JPC2MapMan:13.7.2.1:
Description
BnaCnng55510DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078JPC2]
Coordinates
chrLK036261:+:3702..4915
Molecular Weight (calculated)
25865.9 Da
IEP (calculated)
8.065
GRAVY (calculated)
0.229
Length
224 amino acids
Sequence
(BLAST)
001: MPIFGGSSDS EEERTMHQQT KLFNRQRSIH SIFGGGKVAD ILLWREPKIA ATLVIGVSLL WFLLEVVEYN FITLVCHASM TFMLLFFIWS TASDFLNWER
101: PIIPEVVLDE SSFKELATSF HDRFNQILSK LLDLACGRDP PLFFLTTISL YILSVIGTCI NFMNLLFIGF VSMQTLPVMY EMYEDDVDRM ASMLMRKMRK
201: LYRKVDSNVL SKIPRGTVKS KKYA
Best Arabidopsis Sequence Match ( AT3G18260.1 )
(BLAST)
001: MPIFTGSSSD SEDERTIHKT TKLFTRQRSI HSIFGGGKVA DILLWREPKI AATLVIGVSI LWFLMEVVEY NFITLICHAS MTSMLFFFIW STASDFLNWE
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
Arabidopsis Description
RTNLB9Reticulon-like protein B9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJQ5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.