Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 96.8 | 96.8 |
| HORVU3Hr1G064240.2 | Barley | plasma membrane | 92.24 | 92.24 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 77.63 | 73.59 |
| KXG33168 | Sorghum | golgi, peroxisome, plasma membrane | 70.32 | 71.3 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 69.41 | 68.78 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 62.56 | 58.55 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 51.6 | 50.67 |
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 32.88 | 46.75 |
| VIT_17s0000g03260.t01 | Wine grape | plasma membrane | 45.21 | 46.7 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 42.92 | 44.76 |
| KRH48561 | Soybean | plasma membrane | 44.75 | 44.14 |
| KRH39144 | Soybean | plasma membrane | 44.29 | 43.69 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 42.92 | 42.53 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 35.62 | 41.94 |
| CDY67571 | Canola | plasma membrane | 42.47 | 41.52 |
| Bra037594.1-P | Field mustard | plasma membrane | 42.01 | 41.07 |
| KRH35899 | Soybean | plasma membrane | 39.73 | 41.04 |
| CDX75962 | Canola | plasma membrane | 41.55 | 40.62 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 41.55 | 40.62 |
| AT3G18260.1 | Thale cress | plasma membrane | 40.64 | 39.56 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 39.27 | 39.27 |
| PGSC0003DMT400014404 | Potato | cytosol, plasma membrane, vacuole | 16.44 | 38.3 |
| CDX81500 | Canola | plasma membrane | 32.88 | 34.62 |
| AT1G68230.2 | Thale cress | plasma membrane | 33.79 | 34.42 |
| TraesCS3A01G278800.1 | Wheat | golgi | 38.36 | 33.87 |
| CDX96038 | Canola | plasma membrane | 31.51 | 32.7 |
| Bra004291.1-P | Field mustard | plasma membrane | 31.51 | 32.7 |
| CDY01898 | Canola | plasma membrane | 31.51 | 32.55 |
| TraesCS1A01G081500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 36.07 | 31.47 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 36.53 | 30.77 |
| TraesCS2A01G254300.1 | Wheat | cytosol, peroxisome, vacuole | 34.25 | 30.36 |
| TraesCS4A01G135900.1 | Wheat | peroxisome | 30.59 | 29.52 |
| GSMUA_AchrUn_... | Banana | golgi | 46.12 | 28.69 |
| TraesCS2A01G544000.1 | Wheat | plasma membrane | 25.57 | 28.14 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 31.96 | 27.78 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 40.18 | 27.33 |
| VIT_01s0011g04030.t01 | Wine grape | cytosol | 46.58 | 27.27 |
| TraesCS5A01G418200.1 | Wheat | cytosol, peroxisome, plasma membrane | 32.42 | 27.2 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 39.27 | 26.06 |
| CDY12701 | Canola | plasma membrane | 32.88 | 23.84 |
| Bra033951.1-P | Field mustard | plasma membrane | 32.88 | 23.84 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G261500.1 | EnsemblPlantsGene:TraesCS3A01G261500 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF81 |
| PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix | MapMan:13.7.2.1 | : |
Description
No Description!
Coordinates
chr3A:-:484631940..484633244
Molecular Weight (calculated)
24298.9 Da
IEP (calculated)
9.385
GRAVY (calculated)
0.225
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPHFPSNPD HGPHVTGPFH RHKSIHRILG GGKAADVLLW KNRNVSAGVL AGATLTWFLF DVVEYNAVPL LCQIAIFAML AIFIASNAAQ LFDRAPPRIP
101: QVVVSEHAFR EMALTIHHKL EYAASLLYDI ACGKDLKKFL MVVGSLLLLS VIGGSCSFTS LLYLGFLCAH TLPVLYQHYE TEVDHLVARG GQDIKKFYEK
201: VDSNLLNKIP RGPVKTKFR
101: QVVVSEHAFR EMALTIHHKL EYAASLLYDI ACGKDLKKFL MVVGSLLLLS VIGGSCSFTS LLYLGFLCAH TLPVLYQHYE TEVDHLVARG GQDIKKFYEK
201: VDSNLLNKIP RGPVKTKFR
001: MPIFTGSSSD SEDERTIHKT TKLFTRQRSI HSIFGGGKVA DILLWREPKI AATLVIGVSI LWFLMEVVEY NFITLICHAS MTSMLFFFIW STASDFLNWE
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
Arabidopsis Description
RTNLB9Reticulon-like protein B9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJQ5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.