Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81500 | Canola | plasma membrane | 86.98 | 89.9 |
| Bra004291.1-P | Field mustard | plasma membrane | 83.26 | 84.83 |
| CDY01898 | Canola | plasma membrane | 83.26 | 84.43 |
| CDX96038 | Canola | plasma membrane | 82.79 | 84.36 |
| Bra033951.1-P | Field mustard | plasma membrane | 87.91 | 62.58 |
| CDY12701 | Canola | plasma membrane | 87.44 | 62.25 |
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 33.02 | 46.1 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 45.58 | 44.34 |
| KRH35899 | Soybean | plasma membrane | 42.79 | 43.4 |
| KXG33168 | Sorghum | golgi, peroxisome, plasma membrane | 36.74 | 36.57 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 34.88 | 35.71 |
| Os01t0139000-00 | Rice | plasma membrane | 34.88 | 35.21 |
| EES02516 | Sorghum | peroxisome, plastid | 35.35 | 34.86 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 35.35 | 34.7 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 36.74 | 34.2 |
| TraesCS3A01G261500.1 | Wheat | plasma membrane | 34.42 | 33.79 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 36.74 | 33.76 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 34.88 | 33.63 |
| EES19907 | Sorghum | cytosol, peroxisome, plasma membrane | 35.35 | 33.63 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 34.42 | 33.48 |
| HORVU3Hr1G064240.2 | Barley | plasma membrane | 33.95 | 33.33 |
| AT3G18260.1 | Thale cress | plasma membrane | 34.88 | 33.33 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 36.74 | 33.33 |
| Zm00001d038910_P001 | Maize | plasma membrane | 33.49 | 31.72 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 37.21 | 31.37 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 36.28 | 30.83 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 32.09 | 29.49 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 32.09 | 29.49 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 34.88 | 29.18 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 31.63 | 29.06 |
| AT2G15280.1 | Thale cress | plasma membrane | 26.98 | 28.86 |
| AT4G01230.2 | Thale cress | cytosol | 32.09 | 28.28 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 35.35 | 28.04 |
| AT4G11220.1 | Thale cress | nucleus | 34.42 | 27.31 |
| Zm00001d008590_P001 | Maize | plastid | 16.74 | 27.07 |
| AT4G23630.2 | Thale cress | nucleus | 33.49 | 26.18 |
| AT3G54120.1 | Thale cress | cytosol, plasma membrane, vacuole | 23.26 | 24.63 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 37.21 | 24.24 |
| VIT_01s0011g04030.t01 | Wine grape | cytosol | 40.93 | 23.53 |
| AT3G19460.3 | Thale cress | plasma membrane | 25.12 | 23.08 |
| GSMUA_AchrUn_... | Banana | golgi | 36.28 | 22.16 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 35.81 | 22.13 |
| HORVU1Hr1G083110.3 | Barley | plastid | 29.77 | 21.92 |
| AT3G10260.3 | Thale cress | plasma membrane | 26.98 | 21.72 |
| AT3G10915.7 | Thale cress | plasma membrane | 25.12 | 21.51 |
| AT2G23640.1 | Thale cress | cytosol, peroxisome, plasma membrane | 20.0 | 20.87 |
Protein Annotations
| MapMan:13.7.2.1 | EntrezGene:843152 | UniProt:A0A178WQE6 | UniProt:A2RVT6 | ProteinID:AAG52605.1 | ProteinID:AEE34767.2 |
| ProteinID:AEE34768.2 | ArrayExpress:AT1G68230 | EnsemblPlantsGene:AT1G68230 | RefSeq:AT1G68230 | TAIR:AT1G68230 | RefSeq:AT1G68230-TAIR-G |
| EnsemblPlants:AT1G68230.2 | TAIR:AT1G68230.2 | EMBL:BT030077 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR003388 | RefSeq:NP_001117568.1 | RefSeq:NP_001319346.1 | ProteinID:OAP19815.1 | PFAM:PF02453 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF124 | InterPro:Reticulon | TMHMM:TMhelix |
| UniParc:UPI00019B221F | SEG:seg | : | : | : | : |
Description
RTNLB14Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178WQE6]
Coordinates
chr1:+:25572119..25573447
Molecular Weight (calculated)
25260.1 Da
IEP (calculated)
10.147
GRAVY (calculated)
0.189
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVFGYEMDE HRASSSRRRR SLYHNLGGGR FADIMFWKNK KESGTILGVF TLIWFLFEVV EYPFITFLCQ ILLLFIFIFL IWSYIGSSQL IQSKPPSIND
101: LRISESNWRF LFNKINWFII KLYDISSGKD FRLLFLAVVS LWILSVVGNY FSSLTLLYIV FVGLETIPML YEQYEEELTY AASKSGRDMK KLLNKFNSKV
201: INKIPKAQAK TRRTM
101: LRISESNWRF LFNKINWFII KLYDISSGKD FRLLFLAVVS LWILSVVGNY FSSLTLLYIV FVGLETIPML YEQYEEELTY AASKSGRDMK KLLNKFNSKV
201: INKIPKAQAK TRRTM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.