Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 4
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 66.06 | 94.81 |
| KRH35899 | Soybean | plasma membrane | 52.94 | 55.19 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 47.51 | 47.95 |
| AT1G68230.2 | Thale cress | plasma membrane | 44.34 | 45.58 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 45.7 | 45.29 |
| CDX81500 | Canola | plasma membrane | 42.08 | 44.71 |
| CDY01898 | Canola | plasma membrane | 42.53 | 44.34 |
| Bra004291.1-P | Field mustard | plasma membrane | 42.08 | 44.08 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 41.63 | 43.81 |
| CDX96038 | Canola | plasma membrane | 41.63 | 43.6 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 42.99 | 43.38 |
| EES19907 | Sorghum | cytosol, peroxisome, plasma membrane | 44.34 | 43.36 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 45.7 | 43.16 |
| TraesCS3A01G261500.1 | Wheat | plasma membrane | 42.53 | 42.92 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 44.8 | 42.86 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 45.25 | 42.73 |
| KXG33168 | Sorghum | golgi, peroxisome, plasma membrane | 41.63 | 42.59 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 44.8 | 42.31 |
| HORVU3Hr1G064240.2 | Barley | plasma membrane | 41.63 | 42.01 |
| Zm00001d038910_P001 | Maize | plasma membrane | 42.53 | 41.41 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 40.27 | 40.27 |
| Os01t0139000-00 | Rice | plasma membrane | 36.2 | 37.56 |
| EES02516 | Sorghum | peroxisome, plastid | 35.75 | 36.24 |
| Solyc03g007740.2.1 | Tomato | nucleus | 41.18 | 35.69 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 37.1 | 35.04 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 39.82 | 34.78 |
| Solyc06g082740.2.1 | Tomato | nucleus | 35.29 | 34.06 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 36.2 | 33.76 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 41.18 | 33.7 |
| VIT_01s0011g04030.t01 | Wine grape | cytosol | 57.01 | 33.69 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 39.82 | 33.46 |
| HORVU1Hr1G083110.3 | Barley | plastid | 43.44 | 32.88 |
| Zm00001d008590_P001 | Maize | plastid | 19.46 | 32.33 |
| CDY12701 | Canola | plasma membrane | 43.89 | 32.12 |
| Bra033951.1-P | Field mustard | plasma membrane | 43.89 | 32.12 |
| Solyc01g095200.2.1 | Tomato | plastid | 38.01 | 31.94 |
| Solyc09g055250.2.1 | Tomato | cytosol, endoplasmic reticulum, peroxisome | 34.84 | 31.56 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 29.41 | 31.1 |
| Solyc12g006290.1.1 | Tomato | nucleus | 31.67 | 30.04 |
| Solyc06g049060.2.1 | Tomato | mitochondrion, plasma membrane | 25.79 | 30.0 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 19.0 | 29.58 |
| GSMUA_AchrUn_... | Banana | golgi | 42.99 | 26.99 |
| Solyc01g107620.2.1 | Tomato | plasma membrane | 26.24 | 26.48 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 36.2 | 24.24 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 37.1 | 23.56 |
| Solyc02g090370.2.1 | Tomato | plasma membrane | 19.91 | 23.53 |
Protein Annotations
| EnsemblPlants:Solyc05g008890.2.1 | EnsemblPlantsGene:Solyc05g008890.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | InterPro:Reticulon |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF85 | PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000276669F | UniProt:K4BX63 | MapMan:13.7.2.1 | : | : | : |
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:K4BX63]
Coordinates
chr5:-:3102838..3104660
Molecular Weight (calculated)
25513.2 Da
IEP (calculated)
9.289
GRAVY (calculated)
0.152
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIYSSDSDD PHPSHSAPTR RFLAHNNRPM HAILGGGKVA DILLWRDKTI TGSILIGFTL IWSLFEVMEY NIVTLLCHIS MSIMLILFIW SMGAGFVDWS
101: PPDLRAFMIS DSTFRWLCRK FNSVLVKFYE ISSGKDFRNF FLAITFLWVL SVIGSYFSSL NLLYLGFVCL ATLPALYERY HNEVDYIVSQ GNQDMKKLYN
201: KFDNEVLNKI PRGPVKQKKK F
101: PPDLRAFMIS DSTFRWLCRK FNSVLVKFYE ISSGKDFRNF FLAITFLWVL SVIGSYFSSL NLLYLGFVCL ATLPALYERY HNEVDYIVSQ GNQDMKKLYN
201: KFDNEVLNKI PRGPVKQKKK F
001: MPIFTGSSSD SEDERTIHKT TKLFTRQRSI HSIFGGGKVA DILLWREPKI AATLVIGVSI LWFLMEVVEY NFITLICHAS MTSMLFFFIW STASDFLNWE
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
Arabidopsis Description
RTNLB9Reticulon-like protein B9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJQ5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.