Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g008890.2.1 | Tomato | plasma membrane | 94.81 | 66.06 |
| KRH35899 | Soybean | plasma membrane | 57.79 | 41.98 |
| EES19907 | Sorghum | cytosol, peroxisome, plasma membrane | 48.7 | 33.19 |
| AT1G68230.2 | Thale cress | plasma membrane | 46.1 | 33.02 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 46.75 | 32.88 |
| TraesCS3A01G261500.1 | Wheat | plasma membrane | 46.75 | 32.88 |
| KXG33168 | Sorghum | golgi, peroxisome, plasma membrane | 46.1 | 32.87 |
| CDX81500 | Canola | plasma membrane | 44.16 | 32.69 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 44.16 | 32.38 |
| Bra004291.1-P | Field mustard | plasma membrane | 44.16 | 32.23 |
| CDX96038 | Canola | plasma membrane | 43.51 | 31.75 |
| CDY01898 | Canola | plasma membrane | 43.51 | 31.6 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 47.4 | 31.6 |
| HORVU3Hr1G064240.2 | Barley | plasma membrane | 44.81 | 31.51 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 45.45 | 31.39 |
| Zm00001d038910_P001 | Maize | plasma membrane | 46.1 | 31.28 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 47.4 | 31.2 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 44.16 | 30.77 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 46.75 | 30.77 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 46.1 | 30.34 |
| Os01t0139000-00 | Rice | plasma membrane | 36.36 | 26.29 |
| EES02516 | Sorghum | peroxisome, plastid | 35.71 | 25.23 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 37.66 | 24.79 |
| HORVU1Hr1G083110.3 | Barley | plastid | 46.75 | 24.66 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 36.36 | 23.63 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 38.31 | 23.32 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 38.31 | 23.14 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 39.61 | 23.02 |
| Bra033951.1-P | Field mustard | plasma membrane | 44.81 | 22.85 |
| CDY12701 | Canola | plasma membrane | 44.81 | 22.85 |
| VIT_01s0011g04030.t01 | Wine grape | cytosol | 55.19 | 22.73 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 37.01 | 22.35 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 38.31 | 21.85 |
| PGSC0003DMT400052428 | Potato | cytosol, plasma membrane, vacuole | 29.22 | 21.53 |
| PGSC0003DMT400016142 | Potato | endoplasmic reticulum, golgi, peroxisome | 32.47 | 20.49 |
| PGSC0003DMT400014404 | Potato | cytosol, plasma membrane, vacuole | 11.69 | 19.15 |
| PGSC0003DMT400066222 | Potato | plasma membrane | 24.68 | 18.63 |
| PGSC0003DMT400002449 | Potato | cytosol, nucleus, plasma membrane | 30.52 | 18.5 |
| PGSC0003DMT400042905 | Potato | cytosol, peroxisome, plasma membrane | 27.27 | 17.65 |
| GSMUA_AchrUn_... | Banana | golgi | 40.26 | 17.61 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 36.36 | 16.97 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 37.66 | 16.67 |
| Zm00001d008590_P001 | Maize | plastid | 13.64 | 15.79 |
| PGSC0003DMT400026113 | Potato | plasma membrane, plastid | 24.68 | 15.57 |
| PGSC0003DMT400074138 | Potato | plasma membrane | 29.22 | 15.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400078544 | EnsemblPlantsGene:PGSC0003DMG400030573 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | InterPro:Reticulon |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF85 | PFAM:PF02453 | PFscan:PS50845 | PGSC:PGSC0003DMG400030573 | TMHMM:TMhelix |
| UniParc:UPI000294DA85 | UniProt:M1D0C5 | MapMan:13.7.2.1 | : | : | : |
Description
Reticulon B14 [Source:PGSC_GENE;Acc:PGSC0003DMG400030573]
Coordinates
chr5:+:3460047..3462072
Molecular Weight (calculated)
18105.3 Da
IEP (calculated)
9.335
GRAVY (calculated)
0.229
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYNIVTLLC HISMSIMLIL FIWSMGAGFV DWNPPDFRAF MISDSTFRWL CGKFNSILVK FYEISSGKDF RNFFLAITFL WILSVIGSYF SSLNLLYLGF
101: VCLATLPALY ERYHNEVDYL VRQGNQDMKK LYNKFDTEVL NKIPRGPVKQ KKKF
101: VCLATLPALY ERYHNEVDYL VRQGNQDMKK LYNKFDTEVL NKIPRGPVKQ KKKF
001: MAVFGYEMDE HRASSSRRRR SLYHNLGGGR FADIMFWKNK KESGTILGVF TLIWFLFEVV EYPFITFLCQ ILLLFIFIFL IWSYIGSSQL IQSKPPSIND
101: LRISESNWRF LFNKINWFII KLYDISSGKD FRLLFLAVVS LWILSVVGNY FSSLTLLYIV FVGLETIPML YEQYEEELTY AASKSGRDMK KLLNKFNSKV
201: INKIPKAQAK TRRTM
101: LRISESNWRF LFNKINWFII KLYDISSGKD FRLLFLAVVS LWILSVVGNY FSSLTLLYIV FVGLETIPML YEQYEEELTY AASKSGRDMK KLLNKFNSKV
201: INKIPKAQAK TRRTM
Arabidopsis Description
RTNLB14Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178WQE6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.