Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- peroxisome 2
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0139000-00 | Rice | plasma membrane | 67.43 | 69.01 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 72.02 | 67.09 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 70.64 | 64.98 |
| Zm00001d008590_P001 | Maize | plastid | 37.61 | 61.65 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 44.95 | 46.67 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 70.18 | 46.36 |
| KXG33168 | Sorghum | golgi, peroxisome, plasma membrane | 44.5 | 44.91 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 44.5 | 43.5 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 68.81 | 43.1 |
| EES19907 | Sorghum | cytosol, peroxisome, plasma membrane | 43.12 | 41.59 |
| KRH35899 | Soybean | plasma membrane | 37.61 | 38.68 |
| PGSC0003DMT400014404 | Potato | cytosol, plasma membrane, vacuole | 16.51 | 38.3 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 32.57 | 38.17 |
| VIT_17s0000g03260.t01 | Wine grape | plasma membrane | 36.24 | 37.26 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 36.7 | 36.53 |
| KRH48561 | Soybean | plasma membrane | 36.7 | 36.04 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 36.24 | 35.75 |
| CDY67571 | Canola | plasma membrane | 36.7 | 35.71 |
| Bra037594.1-P | Field mustard | plasma membrane | 36.7 | 35.71 |
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 25.23 | 35.71 |
| KRH39144 | Soybean | plasma membrane | 36.24 | 35.59 |
| AT1G68230.2 | Thale cress | plasma membrane | 34.86 | 35.35 |
| CDX75962 | Canola | plasma membrane | 36.24 | 35.27 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 36.24 | 35.27 |
| CDX81500 | Canola | plasma membrane | 33.49 | 35.1 |
| Bra004291.1-P | Field mustard | plasma membrane | 33.95 | 35.07 |
| CDX96038 | Canola | plasma membrane | 33.95 | 35.07 |
| CDY01898 | Canola | plasma membrane | 33.03 | 33.96 |
| AT3G18260.1 | Thale cress | plasma membrane | 34.86 | 33.78 |
| EES11624 | Sorghum | plasma membrane | 30.28 | 33.33 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 37.16 | 31.4 |
| EER90788 | Sorghum | cytosol, nucleus, plasma membrane | 35.32 | 31.17 |
| KXG21632 | Sorghum | nucleus, peroxisome, plasma membrane | 34.86 | 30.65 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 35.32 | 30.2 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 30.73 | 28.88 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 37.16 | 28.52 |
| EER89811 | Sorghum | peroxisome | 33.03 | 28.12 |
| EES03891 | Sorghum | golgi, peroxisome, plasma membrane | 27.06 | 27.83 |
| EER92307 | Sorghum | peroxisome | 28.9 | 27.63 |
| GSMUA_AchrUn_... | Banana | golgi | 42.66 | 26.42 |
| CDY12701 | Canola | plasma membrane | 33.95 | 24.5 |
| Bra033951.1-P | Field mustard | plasma membrane | 33.95 | 24.5 |
| OQU78555 | Sorghum | extracellular | 24.77 | 24.43 |
| VIT_01s0011g04030.t01 | Wine grape | cytosol | 37.16 | 21.66 |
| KXG34376 | Sorghum | plasma membrane | 29.82 | 20.7 |
Protein Annotations
| MapMan:13.7.2.1 | EntrezGene:8073333 | UniProt:C5XQP5 | EnsemblPlants:EES02516 | ProteinID:EES02516 | ProteinID:EES02516.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | PFAM:PF02453 | PFscan:PS50845 | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF74 | InterPro:Reticulon | EnsemblPlantsGene:SORBI_3003G078900 | unigene:Sbi.11616 | TMHMM:TMhelix | UniParc:UPI0001A84B52 |
| RefSeq:XP_002457396.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:6783049..6784568
Molecular Weight (calculated)
24125.6 Da
IEP (calculated)
9.420
GRAVY (calculated)
0.315
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAAAMNGH YSRAPKLFGR ERTLHAALGG RRAADIILWR DRKASASILA AATAAWGLFE VAEYHFLTVV CYVAMIGMLV FFIWTNASTL FNLPVPRIPD
101: TLVSERASRH AVHDVHRRLT RLVETLHDIA CGKDIKMFIL TVLSLYMASV IADCFSSLTL LYLVVLGTMT VPALYERYES EVDHLVARGV HDLRTHFADM
201: DSGVLRKIPR GTGAAAPK
101: TLVSERASRH AVHDVHRRLT RLVETLHDIA CGKDIKMFIL TVLSLYMASV IADCFSSLTL LYLVVLGTMT VPALYERYES EVDHLVARGV HDLRTHFADM
201: DSGVLRKIPR GTGAAAPK
001: MPIFTGSSSD SEDERTIHKT TKLFTRQRSI HSIFGGGKVA DILLWREPKI AATLVIGVSI LWFLMEVVEY NFITLICHAS MTSMLFFFIW STASDFLNWE
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
Arabidopsis Description
RTNLB9Reticulon-like protein B9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJQ5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.