Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 61.78 | 91.88 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 61.49 | 90.3 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 71.84 | 75.76 |
| EES02516 | Sorghum | peroxisome, plastid | 43.1 | 68.81 |
| Os01t0139000-00 | Rice | plasma membrane | 40.8 | 66.67 |
| Zm00001d008590_P001 | Maize | plastid | 20.69 | 54.14 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 27.01 | 44.76 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 21.84 | 40.86 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 26.15 | 40.81 |
| CDX75962 | Canola | plasma membrane | 25.0 | 38.84 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 25.0 | 38.84 |
| CDY67571 | Canola | plasma membrane | 25.0 | 38.84 |
| Bra037594.1-P | Field mustard | plasma membrane | 24.71 | 38.39 |
| PGSC0003DMT400014404 | Potato | cytosol, plasma membrane, vacuole | 10.34 | 38.3 |
| AT3G18260.1 | Thale cress | plasma membrane | 24.43 | 37.78 |
| VIT_17s0000g03260.t01 | Wine grape | plasma membrane | 22.99 | 37.74 |
| KRH35899 | Soybean | plasma membrane | 22.99 | 37.74 |
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 16.67 | 37.66 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 23.56 | 37.44 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 23.56 | 37.1 |
| HORVU3Hr1G064240.2 | Barley | plasma membrane | 23.28 | 36.99 |
| AT1G68230.2 | Thale cress | plasma membrane | 22.13 | 35.81 |
| CDX96038 | Canola | plasma membrane | 21.55 | 35.55 |
| KRH48561 | Soybean | plasma membrane | 22.41 | 35.14 |
| Bra004291.1-P | Field mustard | plasma membrane | 21.26 | 35.07 |
| CDX81500 | Canola | plasma membrane | 20.69 | 34.62 |
| CDY01898 | Canola | plasma membrane | 20.69 | 33.96 |
| KRH39144 | Soybean | plasma membrane | 21.55 | 33.78 |
| GSMUA_AchrUn_... | Banana | golgi | 33.05 | 32.67 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 22.99 | 31.37 |
| HORVU1Hr1G083110.3 | Barley | plastid | 26.15 | 31.16 |
| HORVU1Hr1G017470.2 | Barley | cytosol, endoplasmic reticulum, nucleus | 21.26 | 29.96 |
| CDY12701 | Canola | plasma membrane | 24.14 | 27.81 |
| Bra033951.1-P | Field mustard | plasma membrane | 24.14 | 27.81 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 20.4 | 27.2 |
| VIT_01s0011g04030.t01 | Wine grape | cytosol | 29.02 | 27.01 |
| HORVU5Hr1G101680.2 | Barley | cytosol, endoplasmic reticulum, peroxisome | 20.11 | 26.82 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 23.56 | 26.11 |
| HORVU4Hr1G050020.1 | Barley | plastid | 19.25 | 25.87 |
| HORVU7Hr1G081290.4 | Barley | plastid | 16.67 | 25.11 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 21.26 | 24.67 |
| HORVU2Hr1G122310.2 | Barley | cytosol, plasma membrane | 10.34 | 19.35 |
| HORVU2Hr1G060770.16 | Barley | plasma membrane | 20.69 | 18.8 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G008400.1 | EnsemblPlantsGene:HORVU3Hr1G008400 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | InterPro:Reticulon |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF74 | PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000B471CE7 | UniProt:A0A287K292 | MapMan:13.7.2.1 | : | : | : |
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287K292]
Coordinates
chrchr3H:+:19016502..19018440
Molecular Weight (calculated)
39030.4 Da
IEP (calculated)
10.832
GRAVY (calculated)
-0.251
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: DDPRRTHHLQ GKKRMSPPQK ETECGSIYLS ISRIQNHKVW IRSQLQKAPG NQSIFLEQGS FDTKTKASNK RPEPKLCLAF SLKTAKVPKP VHIHQIIRAN
101: ENLNGMQSAY RSPHTNTRMA MGGGSHLQGH RAPRLFGRER PVHAALGGRE AADIILWRRP RASASILGAA TAAWALFEVA EYHFLTLACY AAMIAMLTFF
201: IWTNASAFMN LPVPRIPETI LSERTAKQVI LGLHRRLTWF VHRLYAIACG EDVKKFIMTV VSLYIASVVA TCFSSLTLLY LGKQTPTTVP ALYERYEHEV
301: DHLVATGARD VRTHFAKMDS GVLRKIPRGK GATTANNTVH GWHRSHVN
101: ENLNGMQSAY RSPHTNTRMA MGGGSHLQGH RAPRLFGRER PVHAALGGRE AADIILWRRP RASASILGAA TAAWALFEVA EYHFLTLACY AAMIAMLTFF
201: IWTNASAFMN LPVPRIPETI LSERTAKQVI LGLHRRLTWF VHRLYAIACG EDVKKFIMTV VSLYIASVVA TCFSSLTLLY LGKQTPTTVP ALYERYEHEV
301: DHLVATGARD VRTHFAKMDS GVLRKIPRGK GATTANNTVH GWHRSHVN
001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.