Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- golgi 5
- plasma membrane 5
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 37.22 | 58.74 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 31.82 | 53.33 |
| PGSC0003DMT400014404 | Potato | cytosol, plasma membrane, vacuole | 13.92 | 52.13 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 32.67 | 49.78 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 30.97 | 49.32 |
| KXG33168 | Sorghum | golgi, peroxisome, plasma membrane | 29.83 | 48.61 |
| EES19907 | Sorghum | cytosol, peroxisome, plasma membrane | 30.97 | 48.23 |
| Zm00001d038910_P001 | Maize | plasma membrane | 30.97 | 48.02 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 31.53 | 47.44 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 31.25 | 47.01 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 31.25 | 47.01 |
| TraesCS3A01G261500.1 | Wheat | plasma membrane | 28.69 | 46.12 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 28.41 | 45.66 |
| Os01t0139000-00 | Rice | plasma membrane | 26.99 | 44.6 |
| HORVU3Hr1G064240.2 | Barley | plasma membrane | 27.56 | 44.29 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 27.27 | 43.84 |
| KRH35899 | Soybean | plasma membrane | 26.14 | 43.4 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 26.99 | 42.99 |
| EES02516 | Sorghum | peroxisome, plastid | 26.42 | 42.66 |
| VIT_17s0000g03260.t01 | Wine grape | plasma membrane | 25.28 | 41.98 |
| KRH48561 | Soybean | plasma membrane | 25.85 | 40.99 |
| KRH39144 | Soybean | plasma membrane | 25.57 | 40.54 |
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 17.61 | 40.26 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 26.14 | 39.32 |
| HORVU1Hr1G083110.3 | Barley | plastid | 32.39 | 39.04 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 25.28 | 37.55 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 19.6 | 37.1 |
| CDX75962 | Canola | plasma membrane | 23.3 | 36.61 |
| Bra037594.1-P | Field mustard | plasma membrane | 23.3 | 36.61 |
| CDY67571 | Canola | plasma membrane | 23.3 | 36.61 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 23.3 | 36.61 |
| CDX81500 | Canola | plasma membrane | 21.59 | 36.54 |
| Bra004291.1-P | Field mustard | plasma membrane | 21.88 | 36.49 |
| CDX96038 | Canola | plasma membrane | 21.88 | 36.49 |
| AT3G18260.1 | Thale cress | plasma membrane | 23.3 | 36.44 |
| AT1G68230.2 | Thale cress | plasma membrane | 22.16 | 36.28 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 22.44 | 36.07 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, peroxisome | 20.17 | 35.86 |
| CDY01898 | Canola | plasma membrane | 21.59 | 35.85 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 25.0 | 34.92 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 24.72 | 34.66 |
| GSMUA_Achr10P... | Banana | golgi, peroxisome, plasma membrane | 24.15 | 34.27 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 24.43 | 34.26 |
| VIT_01s0011g04030.t01 | Wine grape | cytosol | 36.36 | 34.22 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 24.72 | 33.72 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 23.86 | 33.6 |
| GSMUA_Achr6P15870_001 | Banana | golgi, peroxisome, plasma membrane | 23.58 | 33.47 |
| Zm00001d008590_P001 | Maize | plastid | 12.5 | 33.08 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 32.67 | 33.05 |
| GSMUA_Achr5P07570_001 | Banana | golgi, peroxisome, plasma membrane | 23.01 | 32.66 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 22.73 | 31.62 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 22.44 | 31.35 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 28.12 | 30.0 |
| Bra033951.1-P | Field mustard | plasma membrane | 25.57 | 29.8 |
| GSMUA_Achr3P09820_001 | Banana | cytosol, peroxisome, plasma membrane | 19.32 | 29.57 |
| CDY12701 | Canola | plasma membrane | 25.28 | 29.47 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 20.74 | 29.44 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 19.89 | 28.93 |
| GSMUA_Achr7P05440_001 | Banana | peroxisome, plasma membrane, vacuole | 18.18 | 28.7 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 11.65 | 27.33 |
| GSMUA_Achr10P... | Banana | plasma membrane | 17.33 | 26.52 |
| GSMUA_Achr8P02250_001 | Banana | cytosol, mitochondrion, peroxisome, plasma membrane | 18.47 | 26.32 |
| GSMUA_Achr6P33560_001 | Banana | plasma membrane | 19.32 | 25.76 |
| GSMUA_Achr4P20190_001 | Banana | cytosol, plastid | 20.17 | 25.18 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP00360_001 | EnsemblPlants:GSMUA_AchrUn_randomT00360_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG00360_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 |
| InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF81 | PFAM:PF02453 | PFscan:PS50845 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000296A434 | UniProt:M0U548 | MapMan:13.7.2.1 | : | : |
Description
reticulon domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG00360_001]
Coordinates
chrchrUn_random:-:1173122..1179995
Molecular Weight (calculated)
39710.5 Da
IEP (calculated)
6.906
GRAVY (calculated)
0.214
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHQLKKGSM LRLVVILSSS LVIKQRVEDR LIDVNLSPGP WGTSLCFVPF HFSIIFLMFD LIPRCMNGSH EAKAKGGCLD RSCFHANSIE EFVVLALLTT
101: STTWVLERSV PVEASIENPN VLDKDPHRHA RPSAAAVEAH VEDMPRIIYD SDSNEQPKST TRRRRPLHDL LGGEKVADIL LWRNKYLSAG VLAGATVIWF
201: LFEVAEYHFL TLLCHISITT MLVVFIWSNV AALMDRYPPR IPKVILSEDA FRKFALSFHA KLTRGISVLH DIASGKDLKL FLLAIASLWV VSIVGSCCSS
301: LSLLYLGLLC IHTLPALYER YEDEVNHLAR PYQEDEMICC WTANHLVEDM WP
101: STTWVLERSV PVEASIENPN VLDKDPHRHA RPSAAAVEAH VEDMPRIIYD SDSNEQPKST TRRRRPLHDL LGGEKVADIL LWRNKYLSAG VLAGATVIWF
201: LFEVAEYHFL TLLCHISITT MLVVFIWSNV AALMDRYPPR IPKVILSEDA FRKFALSFHA KLTRGISVLH DIASGKDLKL FLLAIASLWV VSIVGSCCSS
301: LSLLYLGLLC IHTLPALYER YEDEVNHLAR PYQEDEMICC WTANHLVEDM WP
001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.