Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- golgi 3
- plasma membrane 5
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | plasma membrane | 56.44 | 64.78 |
| GSMUA_Achr8P02250_001 | Banana | cytosol, mitochondrion, peroxisome, plasma membrane | 58.71 | 62.75 |
| VIT_08s0007g01720.t01 | Wine grape | plasma membrane | 42.8 | 54.07 |
| KRH66004 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 42.8 | 54.07 |
| PGSC0003DMT400052428 | Potato | cytosol, plasma membrane, vacuole | 42.42 | 53.59 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 42.05 | 53.11 |
| KRH75801 | Soybean | plasma membrane | 41.67 | 52.63 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 36.36 | 47.29 |
| Bra003171.1-P | Field mustard | plasma membrane | 35.98 | 46.8 |
| CDY51584 | Canola | plasma membrane | 35.61 | 46.31 |
| Bra007047.1-P | Field mustard | golgi, plasma membrane, vacuole | 33.71 | 43.41 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 33.71 | 43.41 |
| Zm00001d042846_P001 | Maize | plasma membrane | 34.47 | 43.33 |
| EES03891 | Sorghum | golgi, peroxisome, plasma membrane | 34.47 | 42.92 |
| AT3G54120.1 | Thale cress | cytosol, plasma membrane, vacuole | 32.95 | 42.86 |
| Os04t0367400-02 | Rice | plasma membrane | 34.47 | 42.72 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 32.58 | 41.95 |
| Os01t0851300-01 | Rice | golgi, plasma membrane, vacuole | 30.68 | 39.9 |
| OQU78555 | Sorghum | extracellular | 31.06 | 37.1 |
| GSMUA_Achr7P05440_001 | Banana | peroxisome, plasma membrane, vacuole | 29.17 | 34.53 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 30.3 | 32.0 |
| GSMUA_Achr3P09820_001 | Banana | cytosol, peroxisome, plasma membrane | 27.65 | 31.74 |
| Zm00001d039213_P001 | Maize | golgi, plasma membrane, plastid | 28.03 | 31.62 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 29.55 | 31.08 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 29.55 | 30.95 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 25.76 | 30.49 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 24.24 | 30.48 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 29.55 | 30.23 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 28.03 | 29.37 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 24.24 | 29.22 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 27.27 | 28.46 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 26.89 | 28.29 |
| GSMUA_Achr5P07570_001 | Banana | golgi, peroxisome, plasma membrane | 26.52 | 28.23 |
| GSMUA_Achr4P20190_001 | Banana | cytosol, plastid | 29.92 | 28.01 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, peroxisome | 20.83 | 27.78 |
| GSMUA_Achr6P15870_001 | Banana | golgi, peroxisome, plasma membrane | 25.76 | 27.42 |
| GSMUA_Achr10P... | Banana | golgi, peroxisome, plasma membrane | 25.38 | 27.02 |
| GSMUA_Achr6P04560_001 | Banana | cytosol, peroxisome, plasma membrane | 25.0 | 26.61 |
| GSMUA_Achr9P10200_001 | Banana | cytosol, peroxisome, plasma membrane | 24.24 | 26.45 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 13.64 | 24.0 |
| GSMUA_AchrUn_... | Banana | golgi | 25.76 | 19.32 |
Protein Annotations
| MapMan:13.7.2.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr6G33560_001 | EnsemblPlants:GSMUA_Achr6P33560_001 | EnsemblPlants:GSMUA_Achr6T33560_001 |
| InterPro:IPR003388 | UniProt:M0TCE9 | PFAM:PF02453 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF65 |
| InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI000296748D | SEG:seg | : | : |
Description
Reticulon-like protein B12 [Source:GMGC_GENE;Acc:GSMUA_Achr6G33560_001]
Coordinates
chr6:-:32567030..32570267
Molecular Weight (calculated)
30588.4 Da
IEP (calculated)
10.184
GRAVY (calculated)
0.116
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRSKKQWKP KKATDGIIAL LLGWSRIPPP WPTCVFFPPT RPPKPPQTRE EEDDRREERQ RPVHEILGGG FLADVILWRR KNVTIGILLG ALASRVLFEV
101: AGYTMLSLLS KVLLLLISIL FLWSRAAGIL NRPRPPIPEM HLSEEMMREA AVFVRFHVNV LLSVFNDIVH RKDTKLFYMI ALCLWMISMV SGLIDILTLG
201: YASLVIILTV PALYEKYENG IDSYVKMAHM EVQMYERVYT ECFIKYYIKA RRSLLEKKKL LTNV
101: AGYTMLSLLS KVLLLLISIL FLWSRAAGIL NRPRPPIPEM HLSEEMMREA AVFVRFHVNV LLSVFNDIVH RKDTKLFYMI ALCLWMISMV SGLIDILTLG
201: YASLVIILTV PALYEKYENG IDSYVKMAHM EVQMYERVYT ECFIKYYIKA RRSLLEKKKL LTNV
001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
Arabidopsis Description
RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
SUBAcon: [cytosol,plasma membrane,vacuole]
SUBAcon: [cytosol,plasma membrane,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.