Factsheet for VIT_08s0007g01720.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
golgi 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00640.t01
VIT_07s0031g02730.t01
VIT_08s0007g04670.t01
VIT_09s0002g04360.t01
VIT_11s0016g03780.t01
VIT_14s0060g01340.t01
VIT_15s0046g01760.t01
VIT_16s0013g00170.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54120.1	VIT_09s0002g04360.t01	AT1G52220.1	21798944
AT3G54120.1	VIT_14s0060g01340.t01	AT1G56330.1	21798944
AT3G54120.1	VIT_16s0013g00170.t01	AT1G56330.1	21798944
AT3G54120.1	VIT_11s0016g03780.t01	AT2G20130.1	21798944
AT3G54120.1	VIT_08s0007g04670.t01	AT3G53180.1	21798944
AT3G54120.1	VIT_02s0025g00640.t01	AT4G11220.1	21798944
AT3G54120.1	VIT_07s0031g02730.t01	AT4G11220.1	21798944
AT3G54120.1	VIT_15s0046g01760.t01	AT4G11220.1	21798944
AT3G54120.1	VIT_02s0025g00640.t01	AT5G41600.1	21798944
AT3G54120.1	VIT_07s0031g02730.t01	AT5G41600.1	21798944
AT3G54120.1	VIT_15s0046g01760.t01	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66004	Soybean	endoplasmic reticulum, golgi, plasma membrane	77.51	77.51
KRH75801	Soybean	plasma membrane	75.12	75.12
Solyc09g013110.2.1	Tomato	cytosol, plasma membrane, vacuole	73.68	73.68
PGSC0003DMT400052428	Potato	cytosol, plasma membrane, vacuole	73.68	73.68
CDX67589	Canola	golgi, plasma membrane, vacuole	54.55	56.16
Bra003171.1-P	Field mustard	plasma membrane	54.07	55.66
CDY51584	Canola	plasma membrane	53.59	55.17
AT3G54120.1	Thale cress	cytosol, plasma membrane, vacuole	53.59	55.17
Bra007047.1-P	Field mustard	golgi, plasma membrane, vacuole	52.63	53.66
CDX73507	Canola	cytosol, golgi, plasma membrane	52.63	53.66
CDX78209	Canola	golgi, plasma membrane, vacuole	52.63	53.66
GSMUA_Achr10P...	Banana	plasma membrane	55.02	50.0
GSMUA_Achr8P02250_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	55.02	46.56
VIT_03s0180g00170.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	45.45	45.89
EES03891	Sorghum	golgi, peroxisome, plasma membrane	44.98	44.34
Os04t0367400-02	Rice	plasma membrane	44.5	43.66
Zm00001d042846_P001	Maize	plasma membrane	43.06	42.86
GSMUA_Achr6P33560_001	Banana	plasma membrane	54.07	42.8
Os01t0851300-01	Rice	golgi, plasma membrane, vacuole	38.76	39.9
OQU78555	Sorghum	extracellular	41.15	38.91
Zm00001d039213_P001	Maize	golgi, plasma membrane, plastid	36.36	32.48
VIT_15s0046g01760.t01	Wine grape	cytosol, peroxisome, plasma membrane	37.32	30.59
VIT_02s0025g00640.t01	Wine grape	cytosol, nucleus, plasma membrane	36.84	30.56
VIT_17s0000g03260.t01	Wine grape	plasma membrane	30.62	30.19
VIT_16s0050g01790.t01	Wine grape	cytosol, nucleus, plasma membrane	34.93	28.74
VIT_02s0025g00590.t01	Wine grape	mitochondrion	8.13	28.33
VIT_12s0028g01090.t01	Wine grape	cytosol, peroxisome, plasma membrane	32.54	27.42
VIT_00s0253g00030.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	24.4	23.83
VIT_13s0067g02960.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	34.93	22.32
VIT_07s0031g02730.t01	Wine grape	golgi, mitochondrion, nucleus, plasma membrane	15.31	17.78
VIT_01s0011g04030.t01	Wine grape	cytosol	31.58	17.65

Protein Annotations

EntrezGene:100266674	wikigene:100266674	MapMan:13.7.2.1	ProteinID:CBI30438	ProteinID:CBI30438.3	UniProt:D7THC2
EMBL:FN595991	GO:GO:0003674	GO:GO:0003824	GO:GO:0004843	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	InterPro:IPR003388	EntrezGene:LOC100266674	wikigene:LOC100266674	PFAM:PF02453	PFscan:PS50845
PANTHER:PTHR10994	PANTHER:PTHR10994:SF65	InterPro:Reticulon	TIGR:TC61186	TMHMM:TMhelix	UniParc:UPI00015C97CD
ArrayExpress:VIT_08s0007g01720	EnsemblPlantsGene:VIT_08s0007g01720	EnsemblPlants:VIT_08s0007g01720.t01	RefSeq:XP_002273700	RefSeq:XP_002273700.1	SEG:seg

Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:D7THC2]

Coordinates

chr8:-:15791748..15794584

Molecular Weight (calculated)

23814.7 Da

IEP (calculated)

9.626

GRAVY (calculated)

0.482

Length

209 amino acids

Sequence
(BLAST)

001: MGSSDRLFNR QRTVHQILGG GLVADVMLWR QKNLTVGILL VTLAAWVVFE LSGYTLLSLV SSVFLLLVSI LFLWAKSAAI LNRPAPPLPN LYLSEEIVNE
101: VAAFIRTRTN TLLQVSQDIA LGKDSRMFFK VAAYLWLISV VGGLTDFLTL GYISLVIVLT VPALYERYED YIDRYVMMGY RKLQLLYMKL DEECISKVQK
201: WILEKRKLS

Best Arabidopsis Sequence Match ( AT3G54120.1 )
(BLAST)

001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS

Arabidopsis Description

RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.