Factsheet for VIT_11s0016g03780.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g01140.t01
VIT_09s0002g02400.t01
VIT_11s0016g03780.t01
VIT_14s0060g01340.t01
VIT_16s0013g00170.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20130.1	VIT_11s0016g03780.t01	AT2G20130.1	21798944
AT2G20130.1	VIT_09s0002g02400.t01	AT3G13710.1	21798944
AT2G20130.1	VIT_14s0060g01340.t01	AT4G02080.1	21798944
AT2G20130.1	VIT_16s0013g00170.t01	AT4G02080.1	21798944
AT2G20130.1	VIT_08s0007g01140.t01	AT5G02040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	80.08	83.2
KRH48364	Soybean	cytosol, peroxisome, plasma membrane	81.95	82.26
Solyc12g007130.1.1	Tomato	plasma membrane	78.95	82.03
KRH39309	Soybean	cytosol, peroxisome, plasma membrane	81.2	81.51
GSMUA_Achr6P22910_001	Banana	plasma membrane	78.2	80.93
CDY50615	Canola	plasma membrane	78.2	80.31
Bra013250.1-P	Field mustard	plasma membrane	80.08	79.48
CDX93027	Canola	plasma membrane	80.08	79.48
CDY69713	Canola	plasma membrane	77.44	78.93
CDY05723	Canola	plasma membrane	77.44	78.63
Bra041043.1-P	Field mustard	plasma membrane	78.2	78.49
CDY31990	Canola	plasma membrane	78.2	78.49
AT2G20120.1	Thale cress	plasma membrane	78.95	78.36
Bra015065.1-P	Field mustard	plasma membrane	77.44	78.33
CDY46483	Canola	plasma membrane	77.07	78.24
AT2G20130.1	Thale cress	plasma membrane	74.81	77.73
Os05t0529000-01	Rice	cytosol, peroxisome, plasma membrane	79.32	77.29
GSMUA_Achr3P15700_001	Banana	cytosol, peroxisome, plasma membrane	78.2	75.64
Zm00001d038756_P001	Maize	cytosol, peroxisome, plasma membrane	77.07	75.09
EES19854	Sorghum	cytosol, peroxisome, plasma membrane	77.07	75.09
Zm00001d010806_P001	Maize	cytosol, peroxisome, plasma membrane	76.69	74.73
GSMUA_Achr10P...	Banana	plasma membrane	76.32	74.63
GSMUA_Achr8P27800_001	Banana	cytosol, endoplasmic reticulum, nucleus	76.32	74.09
TraesCS1B01G363400.1	Wheat	golgi, peroxisome, vacuole	74.06	72.16
VIT_18s0001g12380.t01	Wine grape	peroxisome	69.92	70.45
TraesCS1A01G348700.1	Wheat	golgi, peroxisome, plasma membrane	74.81	69.58
TraesCS1D01G351700.1	Wheat	golgi, peroxisome, plasma membrane	74.81	69.58
Os02t0269000-01	Rice	plasma membrane	73.31	67.01
Zm00001d016021_P001	Maize	plasma membrane	69.55	66.55
VIT_07s0031g02010.t01	Wine grape	plasma membrane	60.53	63.14
HORVU1Hr1G081700.1	Barley	mitochondrion	75.19	59.52
OQU84787	Sorghum	nucleus, peroxisome, plasma membrane	68.42	50.42
Zm00001d007647_P001	Maize	mitochondrion	21.05	38.89
Zm00001d025321_P001	Maize	mitochondrion	20.3	37.5

Protein Annotations

EntrezGene:100262854	wikigene:100262854	MapMan:35.1	ProteinID:CBI28058	ProteinID:CBI28058.3	UniProt:D7TBM3
InterPro:DUF502	EMBL:FN595756	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0007275	GO:GO:0008150	GO:GO:0010222	GO:GO:0016020	GO:GO:0016021
EntrezGene:LOC100262854	wikigene:LOC100262854	PFAM:PF04367	PANTHER:PTHR31876	PANTHER:PTHR31876:SF1	TIGR:TC59174
TMHMM:TMhelix	UniParc:UPI00015C8324	ArrayExpress:VIT_11s0016g03780	EnsemblPlantsGene:VIT_11s0016g03780	EnsemblPlants:VIT_11s0016g03780.t01	unigene:Vvi.10262
RefSeq:XP_002284354	RefSeq:XP_002284354.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:3088819..3105779

Molecular Weight (calculated)

29678.8 Da

IEP (calculated)

7.543

GRAVY (calculated)

0.204

Length

266 amino acids

Sequence
(BLAST)

001: MGDEKSSIVM ATRERDRELL IPVSDSVNDG DASSKPSSSA SSSHHPGRET FYKVVRSWAS KKFMTGCVIL FPIAITFYIT WWFIHFVDGF FSPIYAQLGI
101: NIFGLGFITS ITFIFLVGVF MSSWLGASVL GLGEWFIKRM PFVRHIYSAS KQISAAISPD QNTQAFKEVA IIRHPRIGEY AFGFITSSVV LQSYTGEEEL
201: CCVYVPTNHL YIGDIFLVNC KDVIRPNLSV REGIEIVVSG GMSMPQILST VDSRITTVDR SRPERG

Best Arabidopsis Sequence Match ( AT2G20120.2 )
(BLAST)

001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL

Arabidopsis Description

COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.