Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05723 | Canola | plasma membrane | 89.18 | 91.22 |
| Bra041043.1-P | Field mustard | plasma membrane | 89.93 | 90.94 |
| CDY31990 | Canola | plasma membrane | 89.93 | 90.94 |
| AT2G20130.1 | Thale cress | plasma membrane | 80.97 | 84.77 |
| VIT_11s0016g03780.t01 | Wine grape | plasma membrane | 78.36 | 78.95 |
| GSMUA_Achr6P22910_001 | Banana | plasma membrane | 74.25 | 77.43 |
| PGSC0003DMT400000833 | Potato | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 73.88 | 77.34 |
| Solyc12g007130.1.1 | Tomato | plasma membrane | 73.51 | 76.95 |
| KRH39309 | Soybean | cytosol, peroxisome, plasma membrane | 72.76 | 73.58 |
| KRH48364 | Soybean | cytosol, peroxisome, plasma membrane | 72.76 | 73.58 |
| GSMUA_Achr3P15700_001 | Banana | cytosol, peroxisome, plasma membrane | 73.88 | 72.0 |
| GSMUA_Achr8P27800_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 72.76 | 71.17 |
| Os05t0529000-01 | Rice | cytosol, peroxisome, plasma membrane | 71.27 | 69.96 |
| GSMUA_Achr10P... | Banana | plasma membrane | 70.52 | 69.49 |
| Zm00001d038756_P001 | Maize | cytosol, peroxisome, plasma membrane | 70.52 | 69.23 |
| EES19854 | Sorghum | cytosol, peroxisome, plasma membrane | 70.15 | 68.86 |
| Zm00001d010806_P001 | Maize | cytosol, peroxisome, plasma membrane | 69.4 | 68.13 |
| TraesCS1B01G363400.1 | Wheat | golgi, peroxisome, vacuole | 67.54 | 66.3 |
| Os02t0269000-01 | Rice | plasma membrane | 70.15 | 64.6 |
| TraesCS1A01G348700.1 | Wheat | golgi, peroxisome, plasma membrane | 67.91 | 63.64 |
| TraesCS1D01G351700.1 | Wheat | golgi, peroxisome, plasma membrane | 67.91 | 63.64 |
| Zm00001d016021_P001 | Maize | plasma membrane | 65.3 | 62.95 |
| AT2G18460.1 | Thale cress | plasma membrane | 61.19 | 59.85 |
| AT1G43130.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 55.97 | 57.47 |
| HORVU1Hr1G081700.1 | Barley | mitochondrion | 68.66 | 54.76 |
| OQU84787 | Sorghum | nucleus, peroxisome, plasma membrane | 66.04 | 49.03 |
| Zm00001d025321_P001 | Maize | mitochondrion | 20.52 | 38.19 |
| Zm00001d007647_P001 | Maize | mitochondrion | 20.15 | 37.5 |
Protein Annotations
| MapMan:35.1 | ArrayExpress:AT2G20120 | EnsemblPlantsGene:AT2G20120 | RefSeq:AT2G20120 | TAIR:AT2G20120 | RefSeq:AT2G20120-TAIR-G |
| EnsemblPlants:AT2G20120.1 | TAIR:AT2G20120.1 | Symbol:COV1 | InterPro:DUF502 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | PFAM:PF04367 | PO:PO:0000293 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009046 |
| PO:PO:0009047 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF1 | TMHMM:TMhelix | UniParc:UPI0001739159 | SEG:seg |
Description
COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
Coordinates
chr2:-:8687330..8689535
Molecular Weight (calculated)
29675.8 Da
IEP (calculated)
6.238
GRAVY (calculated)
0.232
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.