Factsheet for GSMUA_Achr3P15700_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P15700_001
GSMUA_Achr6P22910_001
GSMUA_Achr7P09070_001
GSMUA_Achr8P02510_001
GSMUA_Achr8P27800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20130.1	GSMUA_Achr10P...	AT2G20130.1	21798944
AT2G20130.1	GSMUA_Achr3P15700_001	AT2G20130.1	21798944
AT2G20130.1	GSMUA_Achr6P22910_001	AT2G20130.1	21798944
AT2G20130.1	GSMUA_Achr8P27800_001	AT2G20130.1	21798944
AT2G20130.1	GSMUA_Achr7P09070_001	AT3G13710.1	21798944
AT2G20130.1	GSMUA_Achr11P...	AT4G02080.1	21798944
AT2G20130.1	GSMUA_Achr8P02510_001	AT5G02040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P22910_001	Banana	plasma membrane	76.0	81.32
GSMUA_Achr8P27800_001	Banana	cytosol, endoplasmic reticulum, nucleus	80.73	81.02
VIT_11s0016g03780.t01	Wine grape	plasma membrane	75.64	78.2
PGSC0003DMT400000833	Potato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	72.0	77.34
Solyc12g007130.1.1	Tomato	plasma membrane	71.64	76.95
CDY69713	Canola	plasma membrane	72.73	76.63
CDY50615	Canola	plasma membrane	72.0	76.45
Bra015065.1-P	Field mustard	plasma membrane	72.73	76.05
CDY46483	Canola	plasma membrane	72.36	75.95
CDY05723	Canola	plasma membrane	72.36	75.95
CDX93027	Canola	plasma membrane	73.45	75.37
Bra013250.1-P	Field mustard	plasma membrane	73.45	75.37
CDY31990	Canola	plasma membrane	72.0	74.72
Bra041043.1-P	Field mustard	plasma membrane	72.0	74.72
AT2G20120.1	Thale cress	plasma membrane	72.0	73.88
AT2G20130.1	Thale cress	plasma membrane	68.73	73.83
Zm00001d038756_P001	Maize	cytosol, peroxisome, plasma membrane	72.73	73.26
Zm00001d010806_P001	Maize	cytosol, peroxisome, plasma membrane	72.36	72.89
Os05t0529000-01	Rice	cytosol, peroxisome, plasma membrane	72.0	72.53
EES19854	Sorghum	cytosol, peroxisome, plasma membrane	72.0	72.53
GSMUA_Achr10P...	Banana	plasma membrane	71.64	72.43
KRH39309	Soybean	cytosol, peroxisome, plasma membrane	69.45	72.08
KRH48364	Soybean	cytosol, peroxisome, plasma membrane	69.09	71.7
TraesCS1B01G363400.1	Wheat	golgi, peroxisome, vacuole	70.55	71.06
TraesCS1A01G348700.1	Wheat	golgi, peroxisome, plasma membrane	71.64	68.88
TraesCS1D01G351700.1	Wheat	golgi, peroxisome, plasma membrane	71.64	68.88
GSMUA_Achr6P19630_001	Banana	plasma membrane	57.45	62.45
GSMUA_Achr5P01100_001	Banana	plasma membrane	57.45	61.96
GSMUA_Achr1P27070_001	Banana	golgi, peroxisome, plasma membrane	61.82	60.93
HORVU1Hr1G081700.1	Barley	mitochondrion	71.64	58.63

Protein Annotations

EnsemblPlants:GSMUA_Achr3P15700_001	EnsemblPlants:GSMUA_Achr3T15700_001	EnsemblPlantsGene:GSMUA_Achr3G15700_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF502	PANTHER:PTHR31876	PANTHER:PTHR31876:SF1	PFAM:PF04367	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002963F3B	UniProt:M0SEY6	MapMan:35.1	:	:	:

Description

protein of unknown function DUF502 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G15700_001]

Coordinates

chr3:+:16751958..16756905

Molecular Weight (calculated)

30904.2 Da

IEP (calculated)

7.542

GRAVY (calculated)

0.079

Length

275 amino acids

Sequence
(BLAST)

001: MMGDEKSSSP MGNRERDREL LIPVADHDSD SRASSSSACP NHHHHHHHHR HSHTGREAFY IVIHSWASKK FMTGCVILFP IAITFYITWW FIHFVDGFFS
101: PIYAQLGINL FGLGFVTSIT FIFLVGVFMS SWLGASVLSL GEWFIKRMPF VRHIYNASKQ ISSAVSPDQN KQAFKEVVII RHPRLGEHAF GFITSTVVLQ
201: SYSGEEELCC VYVPTNHLYI GDIFLVSSKD VIRPNISVRE GIEIVVSGGM SMPQVLSALD PHTVPDGARS GRIYP

Best Arabidopsis Sequence Match ( AT2G20120.2 )
(BLAST)

001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL

Arabidopsis Description

COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.