Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY31990 | Canola | plasma membrane | 95.8 | 94.72 |
AT2G20120.1 | Thale cress | plasma membrane | 91.22 | 89.18 |
AT2G20130.1 | Thale cress | plasma membrane | 83.21 | 85.16 |
CDY50615 | Canola | plasma membrane | 78.24 | 79.15 |
CDX93027 | Canola | plasma membrane | 80.15 | 78.36 |
CDY69713 | Canola | plasma membrane | 77.48 | 77.78 |
VIT_11s0016g03780.t01 | Wine grape | plasma membrane | 78.63 | 77.44 |
GSMUA_Achr6P22910_001 | Banana | plasma membrane | 75.57 | 77.04 |
CDY46483 | Canola | plasma membrane | 76.72 | 76.72 |
PGSC0003DMT400000833 | Potato | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 74.43 | 76.17 |
Solyc12g007130.1.1 | Tomato | plasma membrane | 74.05 | 75.78 |
GSMUA_Achr3P15700_001 | Banana | cytosol, peroxisome, plasma membrane | 75.95 | 72.36 |
KRH48364 | Soybean | cytosol, peroxisome, plasma membrane | 72.9 | 72.08 |
KRH39309 | Soybean | cytosol, peroxisome, plasma membrane | 72.9 | 72.08 |
GSMUA_Achr8P27800_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 74.05 | 70.8 |
GSMUA_Achr10P... | Banana | plasma membrane | 71.37 | 68.75 |
Os05t0529000-01 | Rice | cytosol, peroxisome, plasma membrane | 70.99 | 68.13 |
Zm00001d038756_P001 | Maize | cytosol, peroxisome, plasma membrane | 70.61 | 67.77 |
EES19854 | Sorghum | cytosol, peroxisome, plasma membrane | 70.23 | 67.4 |
Zm00001d010806_P001 | Maize | cytosol, peroxisome, plasma membrane | 70.23 | 67.4 |
CDY36483 | Canola | plasma membrane | 63.36 | 64.09 |
TraesCS1B01G363400.1 | Wheat | golgi, peroxisome, vacuole | 66.41 | 63.74 |
CDY29235 | Canola | peroxisome, plasma membrane, vacuole | 62.98 | 63.71 |
Zm00001d016021_P001 | Maize | plasma membrane | 66.41 | 62.59 |
TraesCS1D01G351700.1 | Wheat | golgi, peroxisome, plasma membrane | 67.56 | 61.89 |
Os02t0269000-01 | Rice | plasma membrane | 68.7 | 61.86 |
TraesCS1A01G348700.1 | Wheat | golgi, peroxisome, plasma membrane | 67.18 | 61.54 |
CDY51223 | Canola | mitochondrion | 15.27 | 58.82 |
CDY47858 | Canola | peroxisome | 57.25 | 57.69 |
CDY36014 | Canola | peroxisome | 56.49 | 56.92 |
HORVU1Hr1G081700.1 | Barley | mitochondrion | 67.56 | 52.68 |
OQU84787 | Sorghum | nucleus, peroxisome, plasma membrane | 66.79 | 48.48 |
Zm00001d025321_P001 | Maize | mitochondrion | 20.99 | 38.19 |
Zm00001d007647_P001 | Maize | mitochondrion | 19.47 | 35.42 |
Protein Annotations
EnsemblPlants:CDY05723 | EnsemblPlantsGene:GSBRNA2T00120756001 | GO:A0A078F1J8 | InterPro:DUF502 | PANTHER:PTHR31876 | PANTHER:PTHR31876:SF1 |
PFAM:PF04367 | ProteinID:CDY05723 | ProteinID:CDY05723.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EEFD64 |
MapMan:35.1 | : | : | : | : | : |
Description
BnaC07g00800D
Coordinates
chrLK031964:-:240123..242190
Molecular Weight (calculated)
29182.3 Da
IEP (calculated)
6.393
GRAVY (calculated)
0.257
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDEKPTVVM ANRERDLELL MPVADKEEGS TSKPSSSSSS HHQASHETLS LFIRGWASKK FMTGCVILLP IAITFYITWW FIHFVDGFFS PIYAQLGINI
101: FGFGFLTSIA FIFLVGVFMS SWLGASVLNL GEWFIKRMPF VRHIYNASKQ ISTAISPDQN TQAFKEVAII RHPRVGEYAF GFITSTVVLQ NYPTEEELCC
201: VYVPTNHLYI GDILLVNSND VIRPNLSVRE GIEIVVSGGM SMPQILSTID KPAASIDRAT SV
101: FGFGFLTSIA FIFLVGVFMS SWLGASVLNL GEWFIKRMPF VRHIYNASKQ ISTAISPDQN TQAFKEVAII RHPRVGEYAF GFITSTVVLQ NYPTEEELCC
201: VYVPTNHLYI GDILLVNSND VIRPNLSVRE GIEIVVSGGM SMPQILSTID KPAASIDRAT SV
001: MGDEKPVIVM ANRERDRELL IPVADSGDKD DGSSSKPSSS SSASSSSHQS SHETLSLFIR GWASKKFMTG CVILLPIAIT FYITWWFIHF VDGFFSPIYA
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL
101: QLGINVFGFG FLTSIAFIFL VGVFMSSWLG ASVLNLGEWF IKRMPFVRHI YNASKQISTA ISPDQNTQAF KEVAIIRHPR VGEYAFGFIT STVVLQNYPT
201: EEELCCVYVP TNHLYIGDLL LVNSNDVIRP NLSVREGIEI VVSGGMSMPQ ILSTVDKPLA SIDRATSL
Arabidopsis Description
COV1Protein of unknown function (DUF502) [Source:TAIR;Acc:AT2G20120]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.