Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51735 | Canola | plasma membrane | 97.8 | 97.8 |
| CDY23634 | Canola | plasma membrane | 83.52 | 83.98 |
| CDX97509 | Canola | plasma membrane | 80.22 | 80.66 |
| AT3G13710.1 | Thale cress | plasma membrane | 70.33 | 68.09 |
| CDY33064 | Canola | cytosol, plasma membrane, plastid | 63.19 | 61.5 |
| CDY24050 | Canola | cytosol, plasma membrane, plastid | 62.09 | 60.43 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 57.69 | 57.69 |
| Solyc03g121460.1.1 | Tomato | plastid | 56.59 | 56.59 |
| CDY26125 | Canola | cytosol, plasma membrane, plastid | 57.69 | 55.56 |
| CDY08228 | Canola | plasma membrane | 56.59 | 54.5 |
| KRH23330 | Soybean | plastid | 53.3 | 52.72 |
| KRH10001 | Soybean | mitochondrion | 53.3 | 52.72 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 52.75 | 51.06 |
| KRH44167 | Soybean | plasma membrane | 48.9 | 50.57 |
| KRH47141 | Soybean | plasma membrane | 49.45 | 50.56 |
| VIT_09s0002g02400.t01 | Wine grape | plastid | 49.45 | 46.63 |
| CDX81845 | Canola | plasma membrane | 44.51 | 44.75 |
| Zm00001d039455_P002 | Maize | extracellular, mitochondrion | 46.7 | 44.04 |
| EES00126 | Sorghum | plastid | 46.15 | 43.75 |
| CDY26225 | Canola | plasma membrane | 43.96 | 43.48 |
| CDY59501 | Canola | plasma membrane | 42.86 | 42.39 |
| CDY55133 | Canola | plasma membrane | 48.9 | 41.78 |
| TraesCS3D01G106500.1 | Wheat | plastid | 43.41 | 41.58 |
| TraesCS3B01G122600.1 | Wheat | plastid | 43.41 | 41.58 |
| TraesCS3A01G104300.1 | Wheat | plastid | 42.86 | 40.84 |
| CDY37482 | Canola | plastid | 46.7 | 40.67 |
| CDY51733 | Canola | plastid | 47.8 | 40.65 |
| Os05t0200280-01 | Rice | plasma membrane | 42.86 | 40.41 |
| TraesCS1B01G143000.1 | Wheat | plastid | 41.76 | 39.58 |
| Os01t0196500-01 | Rice | plastid | 43.41 | 39.3 |
| TraesCS1A01G124100.1 | Wheat | plastid | 41.21 | 39.27 |
| TraesCS1D01G130300.1 | Wheat | plastid | 41.21 | 39.27 |
| CDY51734 | Canola | plastid | 44.51 | 38.76 |
| CDX95035 | Canola | plastid | 42.31 | 37.02 |
| CDX93539 | Canola | plastid | 42.31 | 37.02 |
| HORVU1Hr1G028520.1 | Barley | plastid | 41.76 | 35.19 |
| OQU77594 | Sorghum | plastid | 37.36 | 34.69 |
| CDX72173 | Canola | plastid | 38.46 | 34.48 |
| CDY27245 | Canola | plastid | 38.46 | 34.48 |
| CDY05662 | Canola | plastid | 13.74 | 34.25 |
| Zm00001d037747_P001 | Maize | plastid | 35.16 | 34.04 |
| CDY06788 | Canola | plastid | 35.71 | 33.51 |
| CDY31997 | Canola | plastid | 38.46 | 33.33 |
| CDY43514 | Canola | mitochondrion | 31.87 | 33.14 |
| CDX67633 | Canola | plastid | 37.91 | 32.7 |
| CDY25186 | Canola | plastid | 15.38 | 32.56 |
| CDY41253 | Canola | plastid | 15.38 | 32.56 |
| CDY18870 | Canola | plastid | 36.81 | 32.06 |
| CDX86646 | Canola | plasma membrane | 30.77 | 31.46 |
| CDX74794 | Canola | plastid | 36.81 | 31.46 |
| HORVU3Hr1G018940.2 | Barley | plastid | 43.96 | 31.37 |
| CDY63156 | Canola | plastid | 37.36 | 31.19 |
| CDX70153 | Canola | plastid | 36.81 | 31.16 |
| CDY07736 | Canola | plastid | 37.91 | 31.08 |
| CDX80758 | Canola | plastid | 36.26 | 30.84 |
| CDY51077 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 31.32 | 30.81 |
| CDY15494 | Canola | plasma membrane | 29.67 | 30.34 |
| CDY50022 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 30.22 | 29.57 |
| CDY61529 | Canola | plastid | 20.33 | 29.37 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 29.12 | 29.12 |
| CDY58876 | Canola | plastid | 33.52 | 27.98 |
| CDX81033 | Canola | plastid | 32.97 | 27.52 |
| CDY32804 | Canola | plastid | 27.47 | 26.6 |
| CDY17405 | Canola | plastid | 26.37 | 25.0 |
Protein Annotations
| EnsemblPlants:CDY37483 | EnsemblPlantsGene:GSBRNA2T00064079001 | GO:A0A078HKU3 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF2 | PFAM:PF03208 | ProteinID:CDY37483 | ProteinID:CDY37483.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EC545F | UniProt:A0A078HKU3 | MapMan:22.8.4.3.2 | : |
Description
BnaC01g37490DPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKU3]
Coordinates
chrLK032401:-:163126..164002
Molecular Weight (calculated)
20628.4 Da
IEP (calculated)
7.161
GRAVY (calculated)
0.490
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNYGAIPTS SHGSPVMDPD SISRAKQRIK DGLAMSRPWR QMFDLHSMRL PHGVSEAFSR IKKNLSYFQT NYAIVVLVLI FFSLIKHPTS LIVLTVLVFV
101: WIFLYFFRDE PIKVFRYQID DHTVLVCLSV ITIVLLFLTD VTLNLVGALV TGAVLVLIHA VVRKTEDLFL DEEAATAETI QD
101: WIFLYFFRDE PIKVFRYQID DHTVLVCLSV ITIVLLFLTD VTLNLVGALV TGAVLVLIHA VVRKTEDLFL DEEAATAETI QD
001: MTNYGAIPTS SHASPLVDVE SLSRAKHRIK AGLATRRAWR VMFDFHSMGL PHGVSDAFTR IKTNLAYFRM NYAIVVLIVI FFSLIWHPTS LIVFTVLVVV
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
Arabidopsis Description
PRA1F3PRA1 family protein F3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIC6]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.