Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 80.32 | 80.32 |
| CDY23634 | Canola | plasma membrane | 69.68 | 72.38 |
| CDY37483 | Canola | plasma membrane | 68.09 | 70.33 |
| CDX97509 | Canola | plasma membrane | 67.02 | 69.61 |
| CDY51735 | Canola | plasma membrane | 67.02 | 69.23 |
| Bra027406.1-P | Field mustard | plasma membrane | 65.96 | 68.51 |
| Bra021504.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 64.36 | 66.48 |
| AT1G55190.1 | Thale cress | plasma membrane | 66.49 | 66.14 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 57.45 | 59.34 |
| Solyc03g121460.1.1 | Tomato | plastid | 55.85 | 57.69 |
| KRH10001 | Soybean | mitochondrion | 54.79 | 55.98 |
| KRH23330 | Soybean | plastid | 54.26 | 55.43 |
| VIT_09s0002g02400.t01 | Wine grape | plastid | 53.19 | 51.81 |
| KRH47141 | Soybean | plasma membrane | 48.94 | 51.69 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 50.53 | 50.53 |
| KRH44167 | Soybean | plasma membrane | 46.81 | 50.0 |
| AT1G17700.1 | Thale cress | plasma membrane | 45.21 | 47.22 |
| EES00126 | Sorghum | plastid | 46.28 | 45.31 |
| Zm00001d039455_P002 | Maize | extracellular, mitochondrion | 45.74 | 44.56 |
| TraesCS1B01G143000.1 | Wheat | plastid | 44.68 | 43.75 |
| TraesCS1D01G130300.1 | Wheat | plastid | 44.15 | 43.46 |
| TraesCS3B01G122600.1 | Wheat | plastid | 43.62 | 43.16 |
| TraesCS3D01G106500.1 | Wheat | plastid | 43.62 | 43.16 |
| TraesCS1A01G124100.1 | Wheat | plastid | 43.62 | 42.93 |
| Os05t0200280-01 | Rice | plasma membrane | 43.62 | 42.49 |
| TraesCS3A01G104300.1 | Wheat | plastid | 43.09 | 42.41 |
| Os01t0196500-01 | Rice | plastid | 44.15 | 41.29 |
| HORVU1Hr1G028520.1 | Barley | plastid | 44.68 | 38.89 |
| Zm00001d037747_P001 | Maize | plastid | 38.3 | 38.3 |
| OQU77594 | Sorghum | plastid | 39.89 | 38.27 |
| AT3G56110.1 | Thale cress | plastid | 37.77 | 33.97 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 21.28 | 33.9 |
| HORVU3Hr1G018940.2 | Barley | plastid | 44.68 | 32.94 |
| AT4G29658.2 | Thale cress | plastid | 32.45 | 32.11 |
| AT1G08770.1 | Thale cress | plastid | 35.64 | 32.06 |
| AT5G56230.1 | Thale cress | plasma membrane, plastid | 30.32 | 30.65 |
| AT2G40380.1 | Thale cress | plastid | 34.57 | 30.52 |
| AT1G04260.1 | Thale cress | plasma membrane | 27.13 | 28.02 |
| AT2G38360.1 | Thale cress | plastid | 32.45 | 27.73 |
| AT1G55640.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 26.6 | 26.74 |
| AT5G07110.1 | Thale cress | plastid | 30.32 | 26.39 |
| AT5G01640.1 | Thale cress | plastid | 30.32 | 25.56 |
| AT5G05380.2 | Thale cress | plasma membrane | 35.11 | 23.24 |
Protein Annotations
| MapMan:22.8.4.3.2 | EntrezGene:820580 | UniProt:A0A178VD99 | ProteinID:AEE75402.1 | EMBL:AK229270 | ArrayExpress:AT3G13710 |
| EnsemblPlantsGene:AT3G13710 | RefSeq:AT3G13710 | TAIR:AT3G13710 | RefSeq:AT3G13710-TAIR-G | EnsemblPlants:AT3G13710.1 | TAIR:AT3G13710.1 |
| Unigene:At.39361 | ProteinID:BAB01920.1 | EMBL:BT029440 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005783 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010008 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | RefSeq:NP_187984.1 | ProteinID:OAP03754.1 | PFAM:PF03208 |
| Symbol:PRA1.F4 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF2 | InterPro:Prenylated_rab_accept_PRA1 | UniProt:Q9LIC7 | TMHMM:TMhelix |
| UniParc:UPI00000A0C7F | SEG:seg | : | : | : | : |
Description
PRA1F4PRA1 family protein F4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIC7]
Coordinates
chr3:-:4490628..4493831
Molecular Weight (calculated)
21002.6 Da
IEP (calculated)
9.004
GRAVY (calculated)
0.477
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MANNDEITTS SHASPAVNHE SISRAKQRIK DGLATRRSWR VMFDLHSTGL PHGVSDVFSR IKTNLAYFRS NYAIVILNVI FFSLIWHPTS LIVFTGLVFL
101: WIFLYFLRDV PLKVFRFQID DRAVLIGLSV ITIVLLLLTN ATFNIVAALM AGAVLVLIHA VIRKTDDLFL DEEAATTETS GLTSHPSS
101: WIFLYFLRDV PLKVFRFQID DRAVLIGLSV ITIVLLLLTN ATFNIVAALM AGAVLVLIHA VIRKTDDLFL DEEAATTETS GLTSHPSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.