Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33064 | Canola | cytosol, plasma membrane, plastid | 83.6 | 84.49 |
| CDY26125 | Canola | cytosol, plasma membrane, plastid | 83.07 | 83.07 |
| CDY24050 | Canola | cytosol, plasma membrane, plastid | 81.48 | 82.35 |
| Bra037983.1-P | Field mustard | extracellular, plasma membrane | 60.32 | 81.43 |
| CDY08228 | Canola | plasma membrane | 80.95 | 80.95 |
| Bra014355.1-P | Field mustard | cytosol, plasma membrane, plastid | 80.42 | 80.42 |
| AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 71.96 | 72.34 |
| AT3G13710.1 | Thale cress | plasma membrane | 66.14 | 66.49 |
| Solyc03g121460.1.1 | Tomato | plastid | 60.32 | 62.64 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 59.79 | 62.09 |
| VIT_09s0002g02400.t01 | Wine grape | plastid | 61.38 | 60.1 |
| KRH10001 | Soybean | mitochondrion | 58.2 | 59.78 |
| KRH47141 | Soybean | plasma membrane | 55.56 | 58.99 |
| KRH23330 | Soybean | plastid | 57.14 | 58.7 |
| KRH44167 | Soybean | plasma membrane | 54.5 | 58.52 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 53.44 | 53.72 |
| AT1G17700.1 | Thale cress | plasma membrane | 46.56 | 48.89 |
| Zm00001d039455_P002 | Maize | extracellular, mitochondrion | 48.15 | 47.15 |
| TraesCS1D01G130300.1 | Wheat | plastid | 47.62 | 47.12 |
| EES00126 | Sorghum | plastid | 47.62 | 46.88 |
| Os05t0200280-01 | Rice | plasma membrane | 47.62 | 46.63 |
| TraesCS1A01G124100.1 | Wheat | plastid | 47.09 | 46.6 |
| TraesCS1B01G143000.1 | Wheat | plastid | 47.09 | 46.35 |
| TraesCS3D01G106500.1 | Wheat | plastid | 45.5 | 45.26 |
| TraesCS3B01G122600.1 | Wheat | plastid | 45.5 | 45.26 |
| TraesCS3A01G104300.1 | Wheat | plastid | 44.97 | 44.5 |
| Os01t0196500-01 | Rice | plastid | 45.5 | 42.79 |
| Zm00001d037747_P001 | Maize | plastid | 41.8 | 42.02 |
| OQU77594 | Sorghum | plastid | 43.39 | 41.84 |
| HORVU1Hr1G028520.1 | Barley | plastid | 47.62 | 41.67 |
| AT4G29658.2 | Thale cress | plastid | 37.57 | 37.37 |
| AT1G08770.1 | Thale cress | plastid | 39.68 | 35.89 |
| HORVU3Hr1G018940.2 | Barley | plastid | 46.56 | 34.51 |
| AT3G56110.1 | Thale cress | plastid | 38.1 | 34.45 |
| AT2G40380.1 | Thale cress | plastid | 35.98 | 31.92 |
| AT5G56230.1 | Thale cress | plasma membrane, plastid | 30.69 | 31.18 |
| AT5G07110.1 | Thale cress | plastid | 35.45 | 31.02 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 19.05 | 30.51 |
| AT1G04260.1 | Thale cress | plasma membrane | 27.51 | 28.57 |
| AT1G55640.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 28.04 | 28.34 |
| AT5G01640.1 | Thale cress | plastid | 33.33 | 28.25 |
| AT2G38360.1 | Thale cress | plastid | 32.8 | 28.18 |
| AT5G05380.2 | Thale cress | plasma membrane | 38.1 | 25.35 |
Protein Annotations
| MapMan:22.8.4.3.2 | EntrezGene:841962 | ProteinID:AAG51564.1 | ProteinID:AEE33200.1 | ArrayExpress:AT1G55190 | EnsemblPlantsGene:AT1G55190 |
| RefSeq:AT1G55190 | TAIR:AT1G55190 | RefSeq:AT1G55190-TAIR-G | EnsemblPlants:AT1G55190.1 | TAIR:AT1G55190.1 | EMBL:AY086167 |
| Unigene:At.66851 | EMBL:BT004089 | EMBL:BT005098 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005783 | GO:GO:0005794 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010008 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 |
| RefSeq:NP_564679.1 | PFAM:PF03208 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | Symbol:PRA1.F2 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF2 | InterPro:Prenylated_rab_accept_PRA1 | UniProt:Q9C889 |
| TMHMM:TMhelix | UniParc:UPI000000C275 | SEG:seg | : | : | : |
Description
PRA1F2PRA1 family protein F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C889]
Coordinates
chr1:+:20588397..20589199
Molecular Weight (calculated)
21072.9 Da
IEP (calculated)
7.910
GRAVY (calculated)
0.563
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.