Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- endoplasmic reticulum 2
- extracellular 1
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58876 | Canola | plastid | 88.43 | 87.61 |
| Bra005924.1-P | Field mustard | plastid | 87.5 | 86.7 |
| CDX81033 | Canola | plastid | 86.57 | 85.78 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 27.78 | 50.85 |
| AT3G56110.1 | Thale cress | plastid | 48.61 | 50.24 |
| AT2G40380.1 | Thale cress | plastid | 49.54 | 50.23 |
| AT5G01640.1 | Thale cress | plastid | 50.46 | 48.88 |
| AT2G38360.1 | Thale cress | plastid | 48.61 | 47.73 |
| AT5G05380.2 | Thale cress | plasma membrane | 52.31 | 39.79 |
| AT1G55190.1 | Thale cress | plasma membrane | 31.02 | 35.45 |
| AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 27.78 | 31.91 |
| AT5G56230.1 | Thale cress | plasma membrane, plastid | 27.31 | 31.72 |
| AT1G08770.1 | Thale cress | plastid | 29.63 | 30.62 |
| AT1G17700.1 | Thale cress | plasma membrane | 25.46 | 30.56 |
| AT3G13710.1 | Thale cress | plasma membrane | 26.39 | 30.32 |
| AT1G04260.1 | Thale cress | plasma membrane | 25.46 | 30.22 |
| AT4G29658.2 | Thale cress | plastid | 26.39 | 30.0 |
| AT1G55640.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 24.54 | 28.34 |
Protein Annotations
| MapMan:22.8.4.3.2 | EntrezGene:830602 | UniProt:A0A178UK98 | ProteinID:AED91111.1 | EMBL:AJ249728 | ArrayExpress:AT5G07110 |
| EnsemblPlantsGene:AT5G07110 | RefSeq:AT5G07110 | TAIR:AT5G07110 | RefSeq:AT5G07110-TAIR-G | EnsemblPlants:AT5G07110.1 | TAIR:AT5G07110.1 |
| EMBL:AY086209 | EMBL:AY127009 | Unigene:At.28633 | ProteinID:BAB11169.1 | EMBL:BT000524 | ProteinID:CAB87267.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 |
| RefSeq:NP_196328.1 | ProteinID:OAO94248.1 | PFAM:PF03208 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | Symbol:PRA1.B6 |
| PANTHER:PTHR19317 | PANTHER:PTHR19317:SF34 | InterPro:Prenylated_rab_accept_PRA1 | UniProt:Q9LYQ4 | TMHMM:TMhelix | UniParc:UPI00000ABF63 |
| SEG:seg | : | : | : | : | : |
Description
PRA1B6PRA1 family protein B6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYQ4]
Coordinates
chr5:+:2206000..2206928
Molecular Weight (calculated)
23139.2 Da
IEP (calculated)
8.505
GRAVY (calculated)
0.546
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPLLPTST TPDQLPGGDP QLLSSLRVLL SRVLATVRHA SADARPWAEL VDRSAFSRPP SLSEATSRVR KNFSYFRANY ITLVAILLAA SLLTHPFALF
101: LLASLAASWL FLYFFRPADQ PLVIGGRTFS DLETLGILCL STVVVMFMTS VGSLLMSTLA VGIMGVAIHG AFRAPEDLFL EEQEAIGSGL FAFFNNNASN
201: AAAAAIATSA MSRVRV
101: LLASLAASWL FLYFFRPADQ PLVIGGRTFS DLETLGILCL STVVVMFMTS VGSLLMSTLA VGIMGVAIHG AFRAPEDLFL EEQEAIGSGL FAFFNNNASN
201: AAAAAIATSA MSRVRV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.