Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031001.1-P | Field mustard | plasma membrane | 82.22 | 81.77 |
| CDX81845 | Canola | plasma membrane | 81.67 | 81.22 |
| Bra025954.1-P | Field mustard | plasma membrane | 79.44 | 77.72 |
| CDY26225 | Canola | plasma membrane | 78.33 | 76.63 |
| CDY59501 | Canola | plasma membrane | 77.78 | 76.09 |
| KRH10001 | Soybean | mitochondrion | 50.0 | 48.91 |
| KRH47141 | Soybean | plasma membrane | 48.33 | 48.88 |
| KRH44167 | Soybean | plasma membrane | 47.22 | 48.3 |
| KRH23330 | Soybean | plastid | 48.89 | 47.83 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 48.33 | 47.8 |
| AT1G55190.1 | Thale cress | plasma membrane | 48.89 | 46.56 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 48.33 | 46.28 |
| Solyc03g121460.1.1 | Tomato | plastid | 46.67 | 46.15 |
| AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 47.78 | 45.74 |
| AT3G13710.1 | Thale cress | plasma membrane | 47.22 | 45.21 |
| VIT_09s0002g02400.t01 | Wine grape | plastid | 47.78 | 44.56 |
| EES00126 | Sorghum | plastid | 42.78 | 40.1 |
| Zm00001d039455_P002 | Maize | extracellular, mitochondrion | 42.78 | 39.9 |
| TraesCS1B01G143000.1 | Wheat | plastid | 42.22 | 39.58 |
| TraesCS1D01G130300.1 | Wheat | plastid | 41.67 | 39.27 |
| Os05t0200280-01 | Rice | plasma membrane | 41.67 | 38.86 |
| TraesCS1A01G124100.1 | Wheat | plastid | 41.11 | 38.74 |
| TraesCS3D01G106500.1 | Wheat | plastid | 40.0 | 37.89 |
| TraesCS3B01G122600.1 | Wheat | plastid | 40.0 | 37.89 |
| TraesCS3A01G104300.1 | Wheat | plastid | 39.44 | 37.17 |
| Os01t0196500-01 | Rice | plastid | 40.56 | 36.32 |
| Zm00001d037747_P001 | Maize | plastid | 36.67 | 35.11 |
| OQU77594 | Sorghum | plastid | 37.78 | 34.69 |
| HORVU1Hr1G028520.1 | Barley | plastid | 41.11 | 34.26 |
| AT4G29658.2 | Thale cress | plastid | 33.89 | 32.11 |
| AT1G04260.1 | Thale cress | plasma membrane | 32.22 | 31.87 |
| AT3G56110.1 | Thale cress | plastid | 34.44 | 29.67 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 19.44 | 29.66 |
| AT1G08770.1 | Thale cress | plastid | 33.33 | 28.71 |
| AT2G40380.1 | Thale cress | plastid | 33.89 | 28.64 |
| HORVU3Hr1G018940.2 | Barley | plastid | 40.56 | 28.63 |
| AT2G38360.1 | Thale cress | plastid | 32.78 | 26.82 |
| AT5G56230.1 | Thale cress | plasma membrane, plastid | 26.67 | 25.81 |
| AT5G07110.1 | Thale cress | plastid | 30.56 | 25.46 |
| AT5G01640.1 | Thale cress | plastid | 30.0 | 24.22 |
| AT1G55640.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 25.0 | 24.06 |
| AT5G05380.2 | Thale cress | plasma membrane | 36.11 | 22.89 |
Protein Annotations
| MapMan:22.8.4.3.2 | EntrezGene:838346 | ProteinID:AAF99811.1 | ProteinID:AEE29623.1 | ArrayExpress:AT1G17700 | EnsemblPlantsGene:AT1G17700 |
| RefSeq:AT1G17700 | TAIR:AT1G17700 | RefSeq:AT1G17700-TAIR-G | EnsemblPlants:AT1G17700.1 | TAIR:AT1G17700.1 | Unigene:At.41819 |
| EMBL:BT012593 | EMBL:BT014815 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005783 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010008 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | RefSeq:NP_173212.1 | PFAM:PF03208 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009006 | PO:PO:0009025 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | Symbol:PRA1.F1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF2 | InterPro:Prenylated_rab_accept_PRA1 | UniProt:Q9FZ63 |
| TMHMM:TMhelix | UniParc:UPI00000A59EC | SEG:seg | : | : | : |
Description
PRA1F1PRA1 family protein F1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ63]
Coordinates
chr1:+:6089460..6090339
Molecular Weight (calculated)
20446.2 Da
IEP (calculated)
9.966
GRAVY (calculated)
0.355
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTYGTNQKS SNDLAPKLEY ITRGINQHKR SGLATRRPWK QMLDLGSFNF PRKLATVITR IRANTVYFQT NYTIVVLFSV FLSLIWNPFS LLVLLALLGA
101: WLFLYFLRDE PLTVFDREID HRIVLIIMSV ITLSILFLTD AKLNIAVAIV AGALAVLSHA AVRKTEDLFQ TDEETSLLNP
101: WLFLYFLRDE PLTVFDREID HRIVLIIMSV ITLSILFLTD AKLNIAVAIV AGALAVLSHA AVRKTEDLFQ TDEETSLLNP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.