Skip to main content
crop-pal logo
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • mitochondrion 1
  • plasma membrane 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G55190.1 KXG32164 AT1G71480.1 21798944
AT1G55190.1 KXG40432 AT1G71480.1 21798944
AT1G55190.1 EER90780 AT2G34690.1 18845362
AT1G55190.1 EER87703 AT4G25680.1 21798944
AT1G55190.1 EES00762 AT5G10730.1 21798944
AT1G55190.1 EES05791 AT5G51180.1 21798944
AT1G55190.1 OQU79861 AT5G51180.1 21798944
AT3G13710.1 EES00709 AT1G09180.1 21798944
AT3G13710.1 EES02699 AT1G09180.1 21798944
AT3G13710.1 EES15193 AT1G09180.1 21798944
AT3G13710.1 KXG23692 AT1G09180.1 21798944
AT3G13710.1 KXG28257 AT1G09180.1 21798944
AT3G13710.1 EER91525 AT3G53180.1 21798944
AT3G13710.1 EES00709 AT4G02080.1 21798944
AT3G13710.1 EES02699 AT4G02080.1 21798944
AT3G13710.1 EES15193 AT4G02080.1 21798944
AT3G13710.1 KXG23692 AT4G02080.1 21798944
AT3G13710.1 KXG28257 AT4G02080.1 21798944
AT3G13720.1 EER94911 AT1G03600.1 21798944
AT3G13720.1 EES00126 AT1G55190.1 21798944
AT3G13720.1 OQU77594 AT1G55190.1 21798944
AT3G13720.1 KXG32164 AT1G71480.1 21798944
AT3G13720.1 KXG40432 AT1G71480.1 21798944
AT3G13720.1 KXG34371 AT2G30880.1 21798944
AT3G13720.1 KXG37877 AT2G30880.1 21798944
AT3G13720.1 EER90780 AT2G34690.1 18845362
AT3G13720.1 EES00126 AT3G13720.1 21798944
AT3G13720.1 OQU77594 AT3G13720.1 21798944
AT3G13720.1 OQU88311 AT3G50110.1 21798944
AT3G13720.1 EER95706 AT4G17486.1 21798944
AT3G13720.1 EES07522 AT4G17486.1 21798944
AT3G13720.1 EES11216 AT4G17486.1 21798944
AT3G13720.1 EER87703 AT4G25660.1 21798944
AT3G13720.1 EER87703 AT4G25680.1 21798944
AT3G13720.1 EES10908 AT5G09450.1 21798944
AT3G13720.1 EES05578 AT5G37680.1 21798944
AT3G13720.1 EER95706 AT5G47310.1 21798944
AT3G13720.1 EES07522 AT5G47310.1 21798944
AT3G13720.1 EES11216 AT5G47310.1 21798944
AT3G13720.1 EER96498 AT5G55200.1 21798944
AT3G13720.1 KXG25038 AT5G55200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d037747_P001 Maize plastid 90.82 94.68
Os05t0200280-01 Rice plasma membrane 75.0 76.17
TraesCS1D01G130300.1 Wheat plastid 73.98 75.92
TraesCS1A01G124100.1 Wheat plastid 72.96 74.87
TraesCS1B01G143000.1 Wheat plastid 72.96 74.48
HORVU1Hr1G028520.1 Barley plastid 73.47 66.67
EES00126 Sorghum plastid 61.73 63.02
GSMUA_Achr7P09070_001 Banana plastid 56.63 59.04
KRH23330 Soybean plastid 45.41 48.37
KRH10001 Soybean mitochondrion 44.9 47.83
PGSC0003DMT400006409 Potato plasma membrane 43.88 47.25
Solyc03g121460.1.1 Tomato plastid 42.86 46.15
VIT_09s0002g02400.t01 Wine grape plastid 45.41 46.11
KRH47141 Soybean plasma membrane 41.84 46.07
KRH44167 Soybean plasma membrane 41.33 46.02
CDY26125 Canola cytosol, plasma membrane, plastid 42.86 44.44
Bra014355.1-P Field mustard cytosol, plasma membrane, plastid 42.35 43.92
CDY08228 Canola plasma membrane 42.35 43.92
AT1G55190.1 Thale cress plasma membrane 41.84 43.39
CDY33064 Canola cytosol, plasma membrane, plastid 40.82 42.78
VIT_11s0016g02330.t01 Wine grape plastid 40.82 42.33
CDY24050 Canola cytosol, plasma membrane, plastid 39.8 41.71
AT3G13720.1 Thale cress cytosol, plasma membrane, plastid 39.29 40.96
CDY23634 Canola plasma membrane 37.76 40.88
Bra037983.1-P Field mustard extracellular, plasma membrane 29.08 40.71
CDX97509 Canola plasma membrane 37.24 40.33
AT3G13710.1 Thale cress plasma membrane 38.27 39.89
Bra027406.1-P Field mustard plasma membrane 35.71 38.67
CDY51735 Canola plasma membrane 35.71 38.46
Bra021504.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 35.2 37.91
AT1G17700.1 Thale cress plasma membrane 34.69 37.78
CDX81845 Canola plasma membrane 34.69 37.57
CDY26225 Canola plasma membrane 35.2 37.5
CDY37483 Canola plasma membrane 34.69 37.36
Bra031001.1-P Field mustard plasma membrane 34.18 37.02
Bra025954.1-P Field mustard plasma membrane 34.69 36.96
EER90731 Sorghum plastid 41.84 36.61
KRH49060 Soybean plasma membrane 34.69 34.34
CDY59501 Canola plasma membrane 32.14 34.24
CDY06788 Canola plastid 33.67 34.02
KRH74153 Soybean endoplasmic reticulum, peroxisome, plasma membrane 34.69 34.0
AT4G29658.2 Thale cress plastid 32.14 33.16
CDY43514 Canola mitochondrion 29.59 33.14
Bra011125.1-P Field mustard mitochondrion 29.59 33.14
KXG22202 Sorghum plastid 33.67 30.41
OQU82692 Sorghum plastid 32.65 28.57
EES15518 Sorghum plastid 32.14 27.04
EES03822 Sorghum plastid 29.59 26.01
EER93477 Sorghum plastid 35.2 23.47
KXG38626 Sorghum golgi, plasma membrane, plastid 21.94 23.24
OQU79263 Sorghum plastid 19.39 23.03
CDY37482 Canola plastid 22.96 21.53
Bra021503.1-P Field mustard plastid 22.45 21.15
CDY51734 Canola plastid 22.45 21.05
Bra021502.1-P Field mustard plastid 21.43 19.63
CDY51733 Canola plastid 21.43 19.63
CDY55133 Canola plasma membrane 20.92 19.25
Protein Annotations
EnsemblPlants:OQU77594EnsemblPlantsGene:SORBI_3009G074100EntrezGene:8065918GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR19317PANTHER:PTHR19317:SF10PFAM:PF03208ProteinID:EES19198.1ProteinID:OQU77594
ProteinID:OQU77594.1ProteinID:OQU77595.1ProteinID:OQU77596.1RefSeq:XP_002440768.1SEG:segTMHMM:TMhelix
UniParc:UPI0001A88740UniProt:C5YUK5MapMan:22.8.4.3.2:::
Description
hypothetical protein
Coordinates
chr9:-:9266622..9270630
Molecular Weight (calculated)
20923.6 Da
IEP (calculated)
10.253
GRAVY (calculated)
0.574
Length
196 amino acids
Sequence
(BLAST)
001: MSKYGTIPTT SSTPPPGASS SSSSPLDFIS RAKARGASAL ATRRPWRELA DPRALSVPRG FSAAYRRARA NLAHFAANYA LVVLLVVFVS LLWRPVSMLV
101: FLACFAAWLV LYFLRDRDAD GALVVCGRGV GDGVVIAVLS AVTLVLLLLT GATGFILTSL LVGLLLVLLH ALLHRPADSI DDEAGRWYTP VPPSSY
Best Arabidopsis Sequence Match ( AT1G55190.1 )
(BLAST)
001: MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
Arabidopsis Description
PRA1F2PRA1 family protein F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C889]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.