CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12950

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37680.1	EES12950	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0732500-01	Rice	plasma membrane	98.91	98.91
TraesCS6D01G274800.1	Wheat	cytosol	95.11	95.11
TraesCS6B01G324400.2	Wheat	cytosol	95.11	95.11
TraesCS6A01G293900.1	Wheat	cytosol	95.11	95.11
HORVU6Hr1G073370.2	Barley	cytosol	94.57	94.57
KRH72981	Soybean	cytosol	94.02	94.02
KRH17349	Soybean	cytosol	94.02	94.02
Bra028142.1-P	Field mustard	cytosol	91.3	91.3
Solyc11g011040.1.1	Tomato	plasma membrane	91.3	91.3
GSMUA_Achr6P23020_001	Banana	cytosol	91.3	91.3
AT5G37680.1	Thale cress	cytosol	91.3	91.3
PGSC0003DMT400040524	Potato	cytosol, plastid	80.43	89.7
VIT_14s0006g01090.t01	Wine grape	cytosol	75.54	84.24
Zm00001d000379_P002	Maize	mitochondrion	100.0	81.42
EER92687	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	76.63	76.63
CDY01716	Canola	cytosol	79.89	65.33
CDY01715	Canola	cytosol	79.89	65.33
CDX74569	Canola	cytosol	79.89	65.04
KXG28257	Sorghum	endoplasmic reticulum	34.24	32.47
EES15193	Sorghum	endoplasmic reticulum	33.7	31.79
EES00709	Sorghum	endoplasmic reticulum, extracellular	32.61	31.09
KXG23692	Sorghum	endoplasmic reticulum, extracellular	32.07	30.57
EES02699	Sorghum	endoplasmic reticulum, extracellular	31.52	30.05

Protein Annotations

MapMan:26.10.2.4	Gene3D:3.40.50.300	EntrezGene:8077686	UniProt:C5XZB8	EnsemblPlants:EES05578	ProteinID:EES05578
ProteinID:EES05578.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0051607	InterPro:IPR024156
InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF303
SMART:SM00173	SMART:SM00175	SMART:SM00177	SMART:SM00178	EnsemblPlantsGene:SORBI_3004G248800	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI000182B24B	RefSeq:XP_002452602.1

Description

hypothetical protein

Coordinates

chr4:+:59583428..59586314

Molecular Weight (calculated)

20621.3 Da

IEP (calculated)

8.622

GRAVY (calculated)

0.014

Length

184 amino acids

Sequence
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAVA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQRRFRTM WERYCRGVSA ILYVVDAADR
101: DSVPIAKSEL HDLLTKQSLA GIPLLVLGNK IDKSEALSKQ ALVDQLGLEL IKDREVCCYM ISCKDSVNID VVIDWLIKHS RTAK

Best Arabidopsis Sequence Match ( AT5G37680.1 )
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAIA TGGYSEDMIP TVGFNMRKVT KGNVTIKIWD LGGQRRFRTM WERYCRGVSA IVYVIDAADR
101: DSVPISRSEL NDLLTKPSLN GIPLLILGNK IDKSEALSKQ ALVDQLGLES VTDREVCCYM ISCKDSINID AVIDWLIKHS RTAT

Arabidopsis Description

ARL8CADP-ribosylation factor-like protein 8c [Source:UniProtKB/Swiss-Prot;Acc:Q8W4C8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.