CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84035
CDX96860
CDY49093
CDY62016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37680.1	CDX84035	AT1G14340.1	21798944
AT5G37680.1	CDX96860	AT1G14340.1	21798944
AT5G37680.1	CDY49093	AT1G14340.1	21798944
AT5G37680.1	CDY62016	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01716	Canola	cytosol	97.79	98.22
CDY01715	Canola	cytosol	97.79	98.22
CDY43583	Canola	cytosol	29.65	88.16
Bra028142.1-P	Field mustard	cytosol	71.24	87.5
AT5G37680.1	Thale cress	cytosol	69.47	85.33
KRH17349	Soybean	cytosol	66.81	82.07
KRH72981	Soybean	cytosol	66.37	81.52
TraesCS6A01G293900.1	Wheat	cytosol	65.93	80.98
TraesCS6B01G324400.2	Wheat	cytosol	65.93	80.98
TraesCS6D01G274800.1	Wheat	cytosol	65.93	80.98
HORVU6Hr1G073370.2	Barley	cytosol	65.93	80.98
Solyc11g011040.1.1	Tomato	plasma membrane	65.49	80.43
EES05578	Sorghum	cytosol	65.04	79.89
Os02t0732500-01	Rice	plasma membrane	64.16	78.8
GSMUA_Achr6P23020_001	Banana	cytosol	63.27	77.72
PGSC0003DMT400040524	Potato	cytosol, plastid	56.64	77.58
VIT_14s0006g01090.t01	Wine grape	cytosol	53.1	72.73
CDY02106	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.08	70.11
CDY08727	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.08	70.11
CDY23031	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.08	70.11
CDY36501	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.64	69.57
CDX81307	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.64	69.57
CDY18665	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.64	69.57
Zm00001d000379_P002	Maize	mitochondrion	65.04	65.04
Zm00001d017945_P002	Maize	mitochondrion	53.98	62.56
CDX68554	Canola	cytosol	30.97	54.26
CDY06369	Canola	cytosol	42.92	53.3
CDY37846	Canola	cytosol, mitochondrion, nucleus, plastid	20.35	35.94
CDY65544	Canola	endoplasmic reticulum, extracellular	24.34	28.8
CDX90955	Canola	endoplasmic reticulum, extracellular	24.34	28.5
CDY22027	Canola	endoplasmic reticulum, extracellular	24.34	28.5
CDY39001	Canola	endoplasmic reticulum, extracellular	24.34	28.21
CDY59269	Canola	endoplasmic reticulum, extracellular	24.34	28.21
CDY41713	Canola	endoplasmic reticulum, extracellular	24.34	28.21
CDX95000	Canola	endoplasmic reticulum, golgi	23.89	27.98
CDX93520	Canola	endoplasmic reticulum, golgi	23.89	27.98
CDX91807	Canola	endoplasmic reticulum, extracellular	23.89	27.98
CDY31105	Canola	endoplasmic reticulum, golgi	23.89	27.98
CDY32159	Canola	endoplasmic reticulum, golgi	23.89	27.98
CDY07095	Canola	endoplasmic reticulum	24.34	13.45
CDY22028	Canola	nucleus	9.29	10.24

Protein Annotations

MapMan:26.10.2.4	Gene3D:3.40.50.300	GO:A0A078CEL2	EnsemblPlants:CDX74569	ProteinID:CDX74569	ProteinID:CDX74569.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	EnsemblPlantsGene:GSBRNA2T00114507001	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF303	SMART:SM00175	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0004EE5E6E

Description

BnaA04g08200D

Coordinates

chrLK031801:+:1519527..1521150

Molecular Weight (calculated)

25274.9 Da

IEP (calculated)

6.962

GRAVY (calculated)

0.055

Length

226 amino acids

Sequence
(BLAST)

001: MGLWDSLLNW LRSLFFKQEM ELSLVGLQNA GKTSLVNAIA TGGYSEDMIP TVGFNMRKVT KGNVTIKIWD LGGQRRFRTM WERYCRGVSA IVYVIDAADR
101: DSVPISRSEL HDLLTKPSLN GIPLLILGNK IDKSEALSKP ALVDQLGLDS VADREQTANE FIYLIGAEEE TGFVVTEKHF PFIHSVKHML VVLVKIRDPV
201: GLLQLEPKLS DKVNLQLFGL NLVYTA

Best Arabidopsis Sequence Match ( AT3G49870.1 )
(BLAST)

001: MGLLEAFLNW LRSLFFKQEM ELSLIGLQNA GKTSLVNVVA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQPRFRSM WERYCRAVSA IVYVVDAADP
101: DNLSVSKSEL HDLLSKTSLN GIPLLVLGNK IDKPGALSKE ALTDEMGLTS LTDREVCCFM ISCKNSTNID QVIDWLVKHS KSKN

Arabidopsis Description

ARL8AADP-ribosylation factor-like protein 8a [Source:UniProtKB/Swiss-Prot;Acc:Q8VY57]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.